Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ayp1020_RS06010 Genome accession   NZ_CP007601
Coordinates   1258598..1259314 (+) Length   238 a.a.
NCBI ID   WP_002436958.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain AYP1020     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253598..1264314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ayp1020_RS05985 (AYP1020_1220) - 1254287..1254913 (+) 627 WP_047796485.1 nitroreductase family protein -
  ayp1020_RS05990 (AYP1020_1221) - 1255015..1255800 (+) 786 WP_047796486.1 carbon-nitrogen family hydrolase -
  ayp1020_RS12700 (AYP1020_1222) - 1256168..1256245 (-) 78 WP_049307263.1 delta-lysin family phenol-soluble modulin -
  ayp1020_RS05995 (AYP1020_1223) - 1256562..1257128 (+) 567 WP_047796487.1 accessory gene regulator AgrB -
  ayp1020_RS06000 (AYP1020_1224) agrD 1257131..1257271 (+) 141 WP_047797097.1 cyclic lactone autoinducer peptide AgrD -
  ayp1020_RS06005 (AYP1020_1225) agrC 1257293..1258582 (+) 1290 WP_047796488.1 quorum-sensing sensor histidine kinase AgrC -
  ayp1020_RS06010 (AYP1020_1226) agrA 1258598..1259314 (+) 717 WP_002436958.1 quorum-sensing response regulator AgrA Regulator
  ayp1020_RS06015 (AYP1020_1227) - 1259379..1260338 (-) 960 WP_047796489.1 carbohydrate kinase family protein -
  ayp1020_RS06020 (AYP1020_1228) - 1260345..1261820 (-) 1476 WP_047796490.1 sucrose-6-phosphate hydrolase -
  ayp1020_RS06025 (AYP1020_1229) - 1262055..1263005 (-) 951 WP_047796491.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27857.83 Da        Isoelectric Point: 5.2308

>NTDB_id=121521 ayp1020_RS06010 WP_002436958.1 1258598..1259314(+) (agrA) [Staphylococcus capitis subsp. capitis strain AYP1020]
MKIFVCEDDPRQRENMVSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=121521 ayp1020_RS06010 WP_002436958.1 1258598..1259314(+) (agrA) [Staphylococcus capitis subsp. capitis strain AYP1020]
ATGAAGATATTCGTTTGCGAAGACGATCCTAGACAAAGAGAAAACATGGTTTCAATTATCAAAAATTACATCATGATAGA
AGAAAAACCTATGGAACTAGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATTG
GTTGTTATTTCTTAGATATTCAATTAGAAGCTGATATGAATGGTATTAAACTTGGTAGTGAAATTCGTAAACATGACCCT
GTGGGTAACATTATTTTTGTAACAAGTCACAGCGAACTTACTTATCTCACATTTGTTTATAAAGTGGCTGCTATGGATTT
CATTTTCAAAGATGATCCTTCAGAACTAAAAACAAGAATCATTGACTGTCTTGAAACTGCTCATACACGTCTTAAGTTGC
TATCTAAAGAAAGTAATGTTGAAACAATTGAGTTAAAACGTGGTAGTAACTCTGTGTATGTTCAATATGACGATATTATG
TTCTTTGAATCTTCAACTAAGTCACACAGATTAATCGCACACTTAGATAACCGTCAAATTGAATTTTACGGTAATCTTAA
AGAGTTAGCTCAACTTGATGAACGTTTCTTTAGATGTCATAACAGCTTTGTTGTGAATAGACATAACATTGAATCGATTG
ATTCTAAAGAGCGTATCGTTTATTTCAAAAATGGTGAAAATTGCTTCGCGTCTGTGCGTAATGTTAAAAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

91.176

100

0.912

Multiple sequence alignment