Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WS08_RS05400 Genome accession   NZ_CP007588
Coordinates   1107197..1108573 (-) Length   458 a.a.
NCBI ID   WP_009496193.1    Uniprot ID   A0A075U777
Organism   Weissella tructae strain WS08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1102197..1113573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WS08_RS05390 (WS08_1011) secA 1102824..1105190 (-) 2367 WP_009496191.1 preprotein translocase subunit SecA -
  WS08_RS05395 (WS08_1012) gltX 1105638..1107131 (-) 1494 WP_009496192.1 glutamate--tRNA ligase -
  WS08_RS05400 (WS08_1013) radA 1107197..1108573 (-) 1377 WP_009496193.1 DNA repair protein RadA Machinery gene
  WS08_RS05405 (WS08_1014) - 1108589..1109131 (-) 543 WP_009496194.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  WS08_RS05410 (WS08_1015) - 1109224..1109502 (-) 279 WP_009496195.1 GNAT family N-acetyltransferase -
  WS08_RS05415 (WS08_1016) - 1109504..1110058 (-) 555 WP_009496196.1 NlpC/P60 family protein -
  WS08_RS07005 (WS08_1017) - 1110136..1110906 (-) 771 WP_051747850.1 COG3942 and LysM peptidoglycan-binding domain-containing protein -
  WS08_RS05425 (WS08_1018) - 1111227..1113380 (-) 2154 WP_009496198.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49514.44 Da        Isoelectric Point: 4.9824

>NTDB_id=121382 WS08_RS05400 WP_009496193.1 1107197..1108573(-) (radA) [Weissella tructae strain WS08]
MAKVKTQFACSNCGAISQRYMGRCPSCGAWGTLVEEVQQPEKADRKSRVNLAGEVAKFEKLDDINIEETLRVTSNSNEFD
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGSLANSGQKVLYVSGEESASQIKLRAERLGVQGDADFYLYPETDMSQIR
KAIDELKPDLVVIDSIQTMQEPDVQSSVGSVAQIRETTAELLQIAKTNGVTIFIVGHVTKEGNIAGPKILEHMVDTVLYF
EGDNQRSFRLLRAVKNRFGSTNELGVFEMEHEGLAEVANPSQMFLEERLEDASGSAVVVALEGTRPVLVELQALVTPTVF
GNAQRTSAGIDRNRVSVLMAVLEKRANLLLQNQDAYVRAAGGVRLDEPAIDLAIAMAIASSYRDKGTRPGDAFVGEIGLT
GEIRRVPRLHDRIAEAQTLGFKRVFVPYSGLDAKNKVEGIEIIGVKTLSDALRLGLDG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=121382 WS08_RS05400 WP_009496193.1 1107197..1108573(-) (radA) [Weissella tructae strain WS08]
ATGGCAAAAGTAAAAACACAATTTGCGTGTTCTAACTGTGGTGCGATTTCACAACGCTATATGGGACGTTGTCCCAGTTG
TGGCGCATGGGGAACACTTGTTGAAGAAGTCCAACAACCTGAAAAAGCAGACCGTAAGTCACGTGTTAACCTAGCTGGTG
AAGTGGCGAAGTTTGAAAAGTTGGATGACATTAATATAGAAGAAACTTTGCGTGTGACCTCAAATTCAAATGAATTTGAC
CGCGTATTAGGGGGTGGCATCGTTCCAGGATCACTTGTCTTAATTGGTGGTGATCCCGGAATTGGAAAATCTACACTACT
CTTACAAGTTTCTGGTTCATTAGCTAATTCAGGCCAAAAAGTGCTGTATGTTTCTGGTGAAGAAAGTGCATCACAAATCA
AGTTGCGAGCTGAACGTCTTGGCGTGCAAGGCGATGCGGATTTCTACTTATATCCGGAAACAGATATGAGCCAAATTCGA
AAAGCGATTGATGAATTGAAGCCTGACTTAGTTGTGATTGATTCAATTCAAACGATGCAAGAACCGGATGTGCAATCAAG
TGTTGGGTCAGTTGCACAAATTCGTGAAACGACCGCCGAACTCTTACAAATTGCGAAAACCAATGGCGTTACAATCTTCA
TTGTCGGCCATGTTACTAAGGAAGGTAACATTGCAGGACCAAAGATTTTGGAACACATGGTGGACACCGTTTTGTATTTT
GAAGGTGATAATCAACGTAGCTTCCGATTGTTGCGTGCGGTTAAGAATCGTTTTGGATCAACCAATGAATTGGGTGTTTT
TGAAATGGAACATGAAGGACTAGCTGAAGTAGCGAATCCTTCTCAAATGTTCTTAGAAGAACGGCTAGAAGATGCGAGTG
GGTCGGCCGTTGTTGTTGCGTTAGAAGGGACACGACCAGTGCTAGTTGAACTACAAGCCTTGGTAACGCCTACTGTCTTT
GGTAATGCGCAGCGTACCTCAGCTGGAATTGATCGTAATCGTGTGTCCGTTTTGATGGCTGTCTTAGAGAAACGCGCCAA
TCTATTACTGCAAAATCAAGATGCCTATGTGCGAGCTGCTGGTGGTGTTCGCTTAGATGAACCTGCGATTGACCTTGCGA
TTGCAATGGCAATTGCATCTAGTTATCGCGATAAAGGAACACGACCGGGTGATGCTTTTGTGGGTGAAATTGGTCTAACA
GGTGAAATCAGGCGTGTTCCACGTTTGCATGATCGTATTGCGGAAGCGCAAACGCTTGGCTTCAAGCGAGTGTTCGTACC
GTACTCAGGTTTGGACGCTAAAAACAAGGTCGAAGGCATTGAAATCATTGGGGTTAAAACATTATCTGATGCGTTACGCT
TAGGACTTGATGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075U777

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

61.589

98.908

0.609
  radA Streptococcus pneumoniae Rx1

61.589

98.908

0.609
  radA Streptococcus pneumoniae D39

61.589

98.908

0.609
  radA Streptococcus pneumoniae R6

61.589

98.908

0.609
  radA Streptococcus pneumoniae TIGR4

61.589

98.908

0.609
  radA Streptococcus mitis SK321

61.589

98.908

0.609
  radA Bacillus subtilis subsp. subtilis str. 168

59.041

100

0.592

Multiple sequence alignment