Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LMXYSN_RS06980 Genome accession   NZ_CP007583
Coordinates   1378321..1380012 (+) Length   563 a.a.
NCBI ID   WP_085644188.1    Uniprot ID   -
Organism   Listeria monocytogenes strain XYSN     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1373321..1385012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMXYSN_RS06950 (LMxysn_1371) - 1373331..1373558 (+) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -
  LMXYSN_RS06955 (LMxysn_1372) - 1373561..1374442 (+) 882 WP_085644186.1 polyprenyl synthetase family protein -
  LMXYSN_RS06960 (LMxysn_1373) - 1374641..1374841 (+) 201 WP_003719639.1 cold-shock protein -
  LMXYSN_RS06965 (LMxysn_1374) dxs 1375008..1376837 (+) 1830 WP_077952433.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LMXYSN_RS06970 (LMxysn_1375) - 1376834..1377658 (+) 825 WP_014601980.1 TlyA family RNA methyltransferase -
  LMXYSN_RS06975 (LMxysn_1376) ahrC 1377849..1378298 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  LMXYSN_RS06980 (LMxysn_1377) recN 1378321..1380012 (+) 1692 WP_085644188.1 DNA repair protein RecN Machinery gene
  LMXYSN_RS06985 (LMxysn_1378) - 1380142..1381008 (+) 867 WP_085644190.1 phosphate acyltransferase -
  LMXYSN_RS06990 (LMxysn_1379) buk 1381145..1382212 (+) 1068 WP_003722496.1 butyrate kinase -
  LMXYSN_RS06995 (LMxysn_1380) lpdA 1382227..1383654 (+) 1428 WP_061105696.1 dihydrolipoyl dehydrogenase -
  LMXYSN_RS07000 (LMxysn_1381) - 1383679..1384674 (+) 996 WP_003722498.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63520.36 Da        Isoelectric Point: 5.0693

>NTDB_id=121319 LMXYSN_RS06980 WP_085644188.1 1378321..1380012(+) (recN) [Listeria monocytogenes strain XYSN]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQAATLTDIRKKVAVTLEKQIKQELNQLYMEKAIFSVRFE
ANKMELTELGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYIAKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=121319 LMXYSN_RS06980 WP_085644188.1 1378321..1380012(+) (recN) [Listeria monocytogenes strain XYSN]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCACGGAGAGGAACGTTTAGAGCTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCT
TTAATAGAAAATGGTATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGTCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATCAATGGCAAGCTTGTAACTACTGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGATTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATTGAGAAAGAATGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGTT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGCGCTTATGCGGCGATTCAAGGC
GAGCCAGGTGGACTTGAATTCGTTGGGGAAGCGATGCGTCAAATGGAGACAGCTGCAAGTATTCATACGGATTATAAAGC
AGTTAGTGAAGCAATTTCTTCTAGCTACTATATGTTAGAAGATAGCATGAGCCAAATCAGACAGTCACTTGATCAGCTCG
AATTCCAACCAGAAGAACTTAATCAAATTGAATCGCGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGTAAAACA
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTTAAAGCAGAACTAACAAAACAAGCGGCTACGCTCACTGATATCCGTAAAAAAGTAG
CTGTCACATTAGAAAAACAAATTAAACAAGAATTAAATCAACTTTATATGGAGAAAGCCATTTTTAGTGTGCGTTTTGAA
GCAAACAAAATGGAACTAACAGAATTGGGACAAGATAGCGTCGTCTTTTATATGTCAACAAATCCAGGAGAACCATTAAA
ACCATTAGCAAAAATTGCTTCTGGCGGAGAGTTATCCAGAATGATGTTAGCTTTAAAAACCATTTTCTCTAGACACCAAG
GTATTACATCAATTATTTTCGATGAAGTTGATACCGGAGTAAGTGGACGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTCGGCTCGCAAGTACTTTGTATCAGTCATTTGCCTCAAGTAGCAGCAATGGCGAACCACCATTACTACAT
TGCAAAAAAAGTCCAAAACAAACGTACAACGACTTCCGTTACAGTACTTAAAGGAGAAGAAAAAGTAGAAGAAATCAGCC
GAATGATTGCTGGAATAGAAGTCACCGAACTAACAAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.778

100

0.54

Multiple sequence alignment