Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SD89_RS04540 Genome accession   NZ_CP010449
Coordinates   922721..923791 (-) Length   356 a.a.
NCBI ID   WP_038432344.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 917721..928791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD89_RS04520 (SD89_04525) citX 918301..918879 (+) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -
  SD89_RS04525 (SD89_04530) - 918894..920288 (+) 1395 WP_053308368.1 oxaloacetate decarboxylase subunit alpha -
  SD89_RS04530 (SD89_04535) citC 920398..921450 (-) 1053 WP_023078608.1 [citrate (pro-3S)-lyase] ligase -
  SD89_RS04535 (SD89_04540) - 921539..922021 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  SD89_RS04540 (SD89_04545) xerS 922721..923791 (-) 1071 WP_038432344.1 tyrosine recombinase XerS Machinery gene
  SD89_RS04545 (SD89_04550) - 924260..924957 (+) 698 Protein_836 helix-turn-helix transcriptional regulator -
  SD89_RS04550 (SD89_04555) ffh 925092..926654 (-) 1563 WP_053308369.1 signal recognition particle protein -
  SD89_RS04555 (SD89_04560) - 926669..927001 (-) 333 WP_002989745.1 putative DNA-binding protein -
  SD89_RS04560 (SD89_04565) - 927099..927797 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.5552

>NTDB_id=121301 SD89_RS04540 WP_038432344.1 922721..923791(-) (xerS) [Streptococcus pyogenes strain NGAS322]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQVPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=121301 SD89_RS04540 WP_038432344.1 922721..923791(-) (xerS) [Streptococcus pyogenes strain NGAS322]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGTGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATCTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803