Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DK43_RS09010 Genome accession   NZ_CP007573
Coordinates   1876915..1878333 (-) Length   472 a.a.
NCBI ID   WP_100069431.1    Uniprot ID   -
Organism   Streptococcus anginosus strain SA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1871915..1883333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS08985 (DK43_09205) - 1872049..1872729 (-) 681 WP_003029447.1 rhomboid family intramembrane serine protease -
  DK43_RS08990 (DK43_09210) - 1872722..1873249 (-) 528 WP_003029448.1 5-formyltetrahydrofolate cyclo-ligase -
  DK43_RS08995 (DK43_09215) - 1873294..1874424 (-) 1131 WP_022525454.1 N-acetyldiaminopimelate deacetylase -
  DK43_RS09000 (DK43_09220) dapD 1874437..1875135 (-) 699 WP_003029450.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  DK43_RS09005 (DK43_09225) gltX 1875250..1876707 (-) 1458 WP_022525455.1 glutamate--tRNA ligase -
  DK43_RS09010 (DK43_09230) radA 1876915..1878333 (-) 1419 WP_100069431.1 DNA repair protein RadA Machinery gene
  DK43_RS09015 (DK43_09235) - 1878293..1878736 (-) 444 WP_003029453.1 dUTP diphosphatase -
  DK43_RS09020 (DK43_09240) - 1878830..1879865 (-) 1036 Protein_1793 S66 peptidase family protein -
  DK43_RS10205 - 1880198..1881307 (+) 1110 Protein_1794 IS110 family transposase -
  DK43_RS09035 (DK43_09255) dinB 1881573..1882640 (-) 1068 WP_022525442.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51399.12 Da        Isoelectric Point: 5.4213

>NTDB_id=121243 DK43_RS09010 WP_100069431.1 1876915..1878333(-) (radA) [Streptococcus anginosus strain SA1]
MVCGQVVLEALGIKKEESIIAKKKATFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTEVKNARISLTGGKSRPMKLAE
VTSINVNRTKTDMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDID
SEFYLYAETNMQSIRAEIEKIKPDFLIIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLA
GPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTR
PILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDL
PTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLNIPETIEVIGVTTIGEVLEKVFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=121243 DK43_RS09010 WP_100069431.1 1876915..1878333(-) (radA) [Streptococcus anginosus strain SA1]
ATGGTGTGCGGACAGGTGGTTTTGGAAGCACTGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAAGCAACATT
TGTTTGTCAAAATTGTGAATATCATTCCCCCAAGTATTTAGGGCGCTGTCCTAACTGTGGGGCTTGGTCGTCCTTTGTCG
AAGAGGTCGAAGTTACGGAGGTTAAGAATGCGCGTATTTCTCTGACAGGGGGAAAAAGTCGACCGATGAAGTTAGCAGAG
GTGACTTCTATCAATGTCAACCGTACCAAGACAGATATGGAAGAGTTTAACCGCGTCTTGGGCGGTGGCGTGGTGCCAGG
AAGTTTAGTTCTAATCGGAGGAGACCCAGGTATTGGGAAATCTACCCTTTTATTGCAGGTTTCGACCCAACTCTCTCACA
AAGGAACGGTCTTGTATGTCAGTGGGGAAGAGTCTGCCGAGCAGATTAAGCTGCGCGCGGAACGTCTAGGCGATATTGAT
AGTGAGTTTTATCTCTATGCTGAGACCAATATGCAGAGTATTCGTGCTGAGATTGAAAAAATCAAACCAGATTTTTTGAT
TATAGATTCCATTCAGACGATTCTATCGCCAGAAATTTCCAGCGTGCAAGGGTCGGTTTCGCAAGTGCGAGAAGTGACAG
CGGAGCTGATGCAGCTGGCAAAAACCAACAATATTGCCACCTTTATCGTCGGTCATATGACGAAAGAGGGCACTCTGGCT
GGACCTAGAACTTTGGAACATATGGTGGATACAGTACTTTATTTTGAGGGTGAGCGTCAACATACTTTTCGTATTTTGCG
AGCGGTTAAAAACCGCTTCGGCTCTACGAATGAAATCGGTATTTTTGAAATGCAGTCAGGTGGTCTGGTTGAAGTACTCA
ATCCTAGCCAGGTTTTCTTAGAGGAGCGTTTAGATGGAGCGACAGGCTCTTCTATCGTGGTGACTATGGAGGGGACGCGT
CCAATCCTTGCGGAAGTGCAGGCTTTGGTGACGCCGACCATGTTTGGCAATGCCAAGCGGACAACGACAGGATTGGACTT
TAATCGCGCCAGTCTGATTATGGCTGTTTTGGAAAAGCGAGCAGGGTTATTATTGCAAAATCAAGATGCCTACCTCAAGT
CAGCAGGCGGTGTCAAATTAGATGAGCCAGCTATTGACTTAGCTGTTGCCGTTGCAATTGCTTCGAGTTATAAAGATTTG
CCAACGAATCCACAAGAATGTTTTATTGGTGAAATCGGTCTGACGGGCGAAATCCGCCGTGTCAATCGCATTGAGCAGCG
TATCAATGAAGCTGCTAAGCTGGGCTTCACCAAAGTTTACGCTCCTAAAAACTCTCTGAACGGATTGAACATTCCCGAAA
CTATTGAAGTTATTGGTGTAACAACGATTGGAGAAGTATTGGAGAAGGTGTTTGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(27-54)

AAA domain (AAA_25)

(83-237)

Subunit ChlI of Mg-chelatase (ChlI)

(380-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

91.814

95.763

0.879
  radA Streptococcus pneumoniae D39

91.814

95.763

0.879
  radA Streptococcus pneumoniae R6

91.814

95.763

0.879
  radA Streptococcus pneumoniae TIGR4

91.814

95.763

0.879
  radA Streptococcus mitis SK321

91.814

95.763

0.879
  radA Streptococcus mitis NCTC 12261

91.593

95.763

0.877
  radA Bacillus subtilis subsp. subtilis str. 168

62.582

96.822

0.606

Multiple sequence alignment