Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   DK43_RS07720 Genome accession   NZ_CP007573
Coordinates   1607352..1608062 (+) Length   236 a.a.
NCBI ID   WP_022525174.1    Uniprot ID   -
Organism   Streptococcus anginosus strain SA1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1602352..1613062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS07710 (DK43_07900) treC 1603324..1604955 (-) 1632 WP_022525175.1 alpha,alpha-phosphotrehalase -
  DK43_RS07715 (DK43_07905) treP 1605162..1607174 (-) 2013 WP_003028346.1 PTS system trehalose-specific EIIBC component -
  DK43_RS07720 (DK43_07910) treR 1607352..1608062 (+) 711 WP_022525174.1 trehalose operon repressor Regulator
  DK43_RS07725 (DK43_07915) - 1608215..1609555 (-) 1341 WP_003028348.1 hemolysin family protein -
  DK43_RS07730 (DK43_07920) - 1609669..1611318 (-) 1650 WP_003028349.1 phosphoenolpyruvate carboxykinase (ATP) -
  DK43_RS07735 (DK43_07925) - 1611540..1612664 (-) 1125 WP_003028351.1 AI-2E family transporter -

Sequence


Protein


Download         Length: 236 a.a.        Molecular weight: 27642.67 Da        Isoelectric Point: 9.2637

>NTDB_id=121222 DK43_RS07720 WP_022525174.1 1607352..1608062(+) (treR) [Streptococcus anginosus strain SA1]
MKKYEQIFKLLEQDILNEKYQMNDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKMRGQGSKVIQQEQIDFPVSNLT
SYQELVRQHGMNSKTNVIQLEKITVDKKLSSLTGFPEYRLVWRIIRQRVVDGIASVLDIDYLDKSFVPSISREIAEHSIY
AYLEDELGLHISYAQKEITIDPATNRDKILMNIGNDHHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFVDFSKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=121222 DK43_RS07720 WP_022525174.1 1607352..1608062(+) (treR) [Streptococcus anginosus strain SA1]
ATGAAAAAATATGAACAAATTTTTAAACTCTTAGAACAAGATATTCTAAACGAGAAATATCAGATGAATGATTATCTTCC
TAGCGAACACGAACTTGTCCAGACCTACAAGGTCAGCCGTGACACGATTCGTAAATCGCTTGATTTGCTTCAAAAAGCTG
GTCTCATTCAAAAAATGAGAGGTCAAGGCTCTAAAGTCATCCAACAAGAACAGATTGACTTTCCCGTTTCCAACCTAACT
AGTTACCAAGAACTTGTCCGGCAACATGGAATGAATTCTAAAACCAATGTCATACAGTTAGAAAAAATTACAGTTGATAA
AAAATTATCCAGTCTTACTGGTTTTCCTGAATACCGTCTGGTGTGGCGGATTATTCGCCAAAGGGTCGTTGACGGGATTG
CCTCCGTCTTGGATATTGATTACCTTGATAAGAGTTTTGTCCCTTCTATTAGCCGTGAAATTGCAGAGCATTCAATTTAT
GCTTATTTAGAAGATGAACTGGGACTACACATTTCTTACGCCCAAAAAGAAATCACAATTGATCCAGCCACCAATCGCGA
TAAAATATTGATGAACATTGGAAATGACCACCATGTCGTCTCTGTCAAATCCAAAGTTTATCTTGCAGACGGACAGCAAT
TTCAGTTTACAGATAGTCGTCATAAACTCGAAAAATTCCGTTTCGTTGACTTTTCCAAACGGCAAAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.831

100

0.648


Multiple sequence alignment