Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DK43_RS07105 Genome accession   NZ_CP007573
Coordinates   1481246..1483048 (-) Length   600 a.a.
NCBI ID   WP_021001473.1    Uniprot ID   -
Organism   Streptococcus anginosus strain SA1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1476246..1488048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS07090 (DK43_07270) - 1478809..1479378 (-) 570 WP_080553209.1 LURP-one-related family protein -
  DK43_RS07095 (DK43_07275) prsA 1479516..1480454 (-) 939 WP_003025374.1 peptidylprolyl isomerase PrsA -
  DK43_RS07100 (DK43_07280) - 1480561..1481244 (-) 684 WP_003025376.1 O-methyltransferase -
  DK43_RS07105 (DK43_07285) pepF 1481246..1483048 (-) 1803 WP_021001473.1 oligoendopeptidase F Regulator
  DK43_RS07110 (DK43_07290) coiA 1483000..1484031 (-) 1032 WP_021001472.1 competence protein CoiA family protein Machinery gene
  DK43_RS07115 (DK43_07295) celB 1484229..1485572 (-) 1344 WP_021001471.1 PTS cellobiose transporter subunit IIC -
  DK43_RS07120 (DK43_07300) - 1485612..1486118 (-) 507 WP_037590317.1 hypothetical protein -
  DK43_RS07125 (DK43_07305) - 1486141..1486458 (-) 318 WP_021001470.1 PTS cellobiose transporter subunit IIA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69245.22 Da        Isoelectric Point: 4.5201

>NTDB_id=121218 DK43_RS07105 WP_021001473.1 1481246..1483048(-) (pepF) [Streptococcus anginosus strain SA1]
MAKQRNEIEEKYTWDLTTIFPTDEAFEAELSQVSKELKEASNLAGHLLDSADSLLKTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQAFAFYEPEFMAITDEQYQTFLAEKPELQIYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGDTFGILDNADIVFPTVHDEEGNEVQLTHGNYISLVESKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRNFSSAREAALSANFIPESVYDSLVSAVNKHLPLLHRYIALRAKILGLSDLKMYDLYTPLSEADYKFTYEEALM
KAEEVLAILGEDYLGRVKEAFSDRWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTREN
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNDLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYSTGFSAASALADKIVNGTQEDKEKYLNYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=121218 DK43_RS07105 WP_021001473.1 1481246..1483048(-) (pepF) [Streptococcus anginosus strain SA1]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAACAACGATTTTCCCAACAGATGAAGCTTTTGA
GGCAGAGTTAAGTCAAGTTTCAAAAGAATTAAAAGAAGCCAGCAACTTAGCAGGTCACCTTTTGGATTCAGCTGACAGCC
TCTTAAAAACAACAGAAATCCAATTGGACTTGATGCGTCGTATCGAAAAACTCTATTCCTATGCTCACATGAAAAATGAC
CAAGATACACGCGTGGCAAAATACCAAGAATACCAAGCCAAAGGAATGGCCATTTATAGCGAGTTCGGACAAGCCTTTGC
TTTTTATGAGCCAGAATTTATGGCAATCACAGACGAGCAATATCAGACTTTCTTAGCTGAAAAGCCTGAATTGCAAATCT
ATCAGCATTTCTTTGATAAGTTGCTGCAAAAGAAACCTCACATCCTTTCTCAACGTGAAGAAGAATTGTTGGCAGGAGCT
GGTGAAATTTTTAGTGCTGCGGGTGATACTTTTGGAATCTTAGACAATGCTGATATTGTCTTTCCAACCGTGCACGACGA
AGAAGGAAATGAAGTGCAATTGACGCACGGAAATTACATTAGTTTAGTGGAGTCGAAAAATCGTACAGTCCGCAAGGAAG
CTTATGAAGCGCTTTACAGCGTCTATGAGCAATATCAACACACTTACGCCAAGACTCTCCAAACGAATGTTAAAGTTCAT
AATTACAATGCCAAAGTTCGTAATTTTTCTTCTGCGCGTGAAGCTGCTTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGATAGCTTAGTGTCTGCGGTAAACAAACACTTGCCACTCTTACATCGCTATATTGCGCTACGTGCAAAGATTTTAGGCC
TTTCTGATTTGAAAATGTATGACCTCTATACACCATTGTCAGAAGCAGATTACAAATTTACTTATGAGGAAGCCTTGATG
AAAGCAGAAGAAGTCTTAGCTATCCTTGGAGAAGATTATCTAGGTCGAGTAAAAGAAGCCTTTTCAGATCGTTGGATTGA
TGTTTATGAAAACCAAGGCAAGCGCTCTGGGGCTTATTCTGGTGGTTCTTACGATACCAATGCTTTTATGTTGCTCAACT
GGCAAGATACGTTGGACAATCTTTTCACGCTGGTTCATGAAACAGGTCACAGTATGCATTCTAGCTATACTCGTGAAAAT
CAGCCATACGTTTACGGAGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACGACCAATGAAAATATCCTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACCCGCTTTGCGATTCTGAATCATTTCTTGGACGGTTTCCGTGGAACTGTTT
TCCGCCAAACTCAATTTGCCGAGTTTGAACATGCCATTCACAAAGCTGACCAAGAAGGTCAAGTCTTGACGAGTGAATTT
TTGAATGATTTGTACGCAGATTTGAATGAAAAATATTATGGTTTGACGAAAGAAGACAACCCACAAATTCAATACGAATG
GGCACGGATTCCGCATTTCTACTATGATTACTATGTTTTTCAATACTCAACCGGTTTCTCAGCTGCTTCTGCCTTAGCAG
ATAAGATTGTTAACGGAACGCAAGAAGATAAAGAGAAGTATCTCAACTACTTGAAAGCAGGAAATTCTGATTATCCGCTA
AATGTCATTAAAAAAGCTGGTGTAGATATGGAAAAAGAAGACTATCTCAATGCTGCCTTTGCAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTCGTAGAAAAGTTAGGACTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.128

99.333

0.687

Multiple sequence alignment