Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   DK41_RS06605 Genome accession   NZ_CP007570
Coordinates   1340603..1341829 (-) Length   408 a.a.
NCBI ID   WP_000918412.1    Uniprot ID   A0AAV3JKF5
Organism   Streptococcus agalactiae strain GBS1-NY     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335603..1346829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK41_RS06580 (DK41_06665) - 1336477..1337853 (-) 1377 Protein_1221 amino acid permease -
  DK41_RS06585 (DK41_06670) - 1337983..1338633 (-) 651 WP_000120090.1 HXXEE domain-containing protein -
  DK41_RS12130 (DK41_06675) - 1338791..1339114 (-) 324 WP_001867206.1 HXXEE domain-containing protein -
  DK41_RS12225 - 1339166..1339294 (-) 129 WP_000854047.1 hypothetical protein -
  DK41_RS06595 (DK41_06680) - 1339386..1340015 (+) 630 WP_000140673.1 TetR/AcrR family transcriptional regulator -
  DK41_RS06600 (DK41_06685) yihA 1339996..1340592 (-) 597 WP_000796925.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DK41_RS06605 (DK41_06690) clpX 1340603..1341829 (-) 1227 WP_000918412.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  DK41_RS06615 (DK41_06700) - 1342047..1342541 (-) 495 WP_000166043.1 dihydrofolate reductase -
  DK41_RS06620 (DK41_06705) - 1342621..1343460 (-) 840 WP_000158597.1 thymidylate synthase -
  DK41_RS06625 (DK41_06710) - 1343614..1344786 (+) 1173 WP_001873466.1 hydroxymethylglutaryl-CoA synthase -
  DK41_RS06630 (DK41_06715) - 1344788..1346071 (+) 1284 WP_000161688.1 hydroxymethylglutaryl-CoA reductase, degradative -
  DK41_RS06635 (DK41_06720) - 1346163..1346612 (+) 450 WP_001039193.1 DUF1836 domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44850.28 Da        Isoelectric Point: 4.4424

>NTDB_id=121063 DK41_RS06605 WP_000918412.1 1340603..1341829(-) (clpX) [Streptococcus agalactiae strain GBS1-NY]
MAGNRNNDMNVYCSFCGKSQDEVKKIIAGNGVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLEILNQYVVGQDR
AKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQINTKN
ILFIVGGAFDGIEDLVKQRLGEKIIGFGQTSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALELLTAEDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALLAIADKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEGT
DKPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=121063 DK41_RS06605 WP_000918412.1 1340603..1341829(-) (clpX) [Streptococcus agalactiae strain GBS1-NY]
ATGGCTGGGAATCGTAATAACGATATGAATGTCTATTGTTCATTTTGTGGCAAAAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAATGGTGTTTTCATTTGTAATGAATGTGTGGCCTTATCACAAGAAATTATTAAGGAAGAATTAGCTGAGGAAG
TACTTGCTGATTTAGCAGAAGTACCAAAACCTAAGGAACTATTAGAAATATTAAATCAATATGTTGTAGGGCAAGATCGT
GCTAAACGTGCTTTAGCAGTTGCTGTCTACAATCATTACAAGCGTGTTAGTTATACCGAGAGTAGTGACGATGATGTAGA
TTTGCAAAAATCCAACATTTTGATGATTGGTCCAACTGGCTCAGGAAAAACCTTCTTAGCACAAACACTAGCTAAAAGCC
TTAATGTACCGTTTGCTATTGCAGATGCGACTTCATTGACCGAAGCAGGATACGTTGGAGAAGATGTTGAGAATATTCTT
CTTAAATTGATTCAAGCTGCTGATTATAATGTCGAACGTGCTGAGCGTGGTATTATCTACGTTGATGAAATAGATAAAAT
TGCTAAGAAAGGCGAAAATGTTTCTATCACACGTGATGTATCTGGTGAAGGTGTACAGCAAGCCCTTCTTAAAATTATTG
AGGGTACGGTAGCAAGTGTTCCCCCACAGGGTGGGCGTAAACATCCTAACCAAGAAATGATTCAAATTAATACCAAGAAC
ATCCTTTTTATTGTCGGTGGTGCTTTTGATGGTATTGAAGACCTTGTGAAGCAACGTTTAGGCGAAAAAATTATTGGTTT
TGGACAGACAAGCCGCAAAATTGATGACAACGCTTCTTATATGCAAGAGATAATTTCTGAGGATATTCAAAAGTTTGGAC
TGATTCCAGAGTTTATTGGCCGTTTACCAGTAGTTGCAGCGTTAGAACTTCTTACTGCAGAAGATCTGGTTCGTATTCTG
ACAGAACCACGCAATGCTTTGGTTAAACAATACCAAACCTTATTATCTTATGATGGTGTAGAATTGGAATTTGATCAGGA
TGCTCTATTGGCTATCGCTGATAAGGCTATCGAGCGCAAGACTGGTGCACGTGGTTTACGTTCTATTATTGAAGAAACGA
TGCTTGATATCATGTTTGAAATTCCAAGCCAAGAAGATGTAACAAAAGTTCGTATCACAAAGGCTGCTGTTGAGGGTACT
GACAAGCCTGTTTTAGAGACGGCTTAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

90.709

100

0.909
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58

98.039

0.569

Multiple sequence alignment