Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DK41_RS03945 Genome accession   NZ_CP007570
Coordinates   759100..759909 (+) Length   269 a.a.
NCBI ID   WP_001289498.1    Uniprot ID   X5KFV3
Organism   Streptococcus agalactiae strain GBS1-NY     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 754100..764909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK41_RS03920 (DK41_03985) - 754429..755124 (-) 696 WP_000173643.1 amino acid ABC transporter permease -
  DK41_RS03925 (DK41_03990) - 755137..755937 (-) 801 WP_000946171.1 transporter substrate-binding domain-containing protein -
  DK41_RS03930 (DK41_03995) - 755949..756704 (-) 756 WP_000053150.1 amino acid ABC transporter ATP-binding protein -
  DK41_RS03935 (DK41_04000) vicR 757044..757754 (+) 711 WP_000722052.1 response regulator YycF Regulator
  DK41_RS03940 (DK41_04005) vicK 757747..759096 (+) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DK41_RS03945 (DK41_04010) vicX 759100..759909 (+) 810 WP_001289498.1 MBL fold metallo-hydrolase Regulator
  DK41_RS03950 (DK41_04015) - 759912..760280 (+) 369 WP_000719384.1 YbaN family protein -
  DK41_RS03955 (DK41_04020) rnc 760456..761142 (+) 687 WP_000661526.1 ribonuclease III -
  DK41_RS03960 (DK41_04025) smc 761150..764689 (+) 3540 WP_000478777.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30273.24 Da        Isoelectric Point: 6.2265

>NTDB_id=121052 DK41_RS03945 WP_001289498.1 759100..759909(+) (vicX) [Streptococcus agalactiae strain GBS1-NY]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=121052 DK41_RS03945 WP_001289498.1 759100..759909(+) (vicX) [Streptococcus agalactiae strain GBS1-NY]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCACGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCCTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5KFV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment