Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   DK41_RS01055 Genome accession   NZ_CP007570
Coordinates   175335..176381 (+) Length   348 a.a.
NCBI ID   WP_000410284.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS1-NY     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 170335..181381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK41_RS01040 (DK41_01050) - 171594..173249 (+) 1656 WP_001118759.1 peptide ABC transporter substrate-binding protein -
  DK41_RS01045 (DK41_01055) - 173367..174281 (+) 915 WP_000598965.1 ABC transporter permease -
  DK41_RS01050 (DK41_01060) - 174291..175322 (+) 1032 WP_000764050.1 ABC transporter permease -
  DK41_RS01055 (DK41_01065) oppD 175335..176381 (+) 1047 WP_000410284.1 ABC transporter ATP-binding protein Regulator
  DK41_RS01060 (DK41_01070) amiF 176381..177313 (+) 933 WP_000138506.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38745.21 Da        Isoelectric Point: 4.7128

>NTDB_id=121031 DK41_RS01055 WP_000410284.1 175335..176381(+) (oppD) [Streptococcus agalactiae strain GBS1-NY]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGDVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=121031 DK41_RS01055 WP_000410284.1 175335..176381(+) (oppD) [Streptococcus agalactiae strain GBS1-NY]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGGATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGTGGAAATGAGATTTCGATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCATGCAAATAGCGGAGCCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAACGATTACCCACATCAGTGGTCTGGAGGAATG
CGTCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATCGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.251

99.713

0.79
  amiE Streptococcus salivarius strain HSISS4

55.162

97.414

0.537
  amiE Streptococcus thermophilus LMG 18311

54.572

97.414

0.532
  amiE Streptococcus thermophilus LMD-9

54.572

97.414

0.532

Multiple sequence alignment