Detailed information NTG0120988

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SH06_RS18160
• Genome accession: NZ_CP010442
• Coordinates: 3656438..3657430 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli K-12 strain K-12 MG1655
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3651438..3662430

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SH06_RS18140 (SH06_18145)	otnK	3652214..3653380 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
SH06_RS18145 (SH06_18150)	ygbL	3653472..3654110 (+)	639	WP_001278991.1	aldolase	-
SH06_RS18150 (SH06_18155)	ygbM	3654115..3654891 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
SH06_RS18155 (SH06_18160)	ygbN	3654980..3656344 (+)	1365	WP_000104441.1	GntP family transporter	-
SH06_RS18160 (SH06_18165)	rpoS	3656438..3657430 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
SH06_RS18165 (SH06_18170)	nlpD	3657493..3658587 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
SH06_RS18170 (SH06_18175)	pcm	3658772..3659398 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
SH06_RS18175 (SH06_18180)	surE	3659392..3660153 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
SH06_RS18180 (SH06_18185)	truD	3660134..3661183 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
SH06_RS18185 (SH06_18190)	ispF	3661180..3661659 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
SH06_RS18190 (SH06_18195)	ispD	3661659..3662369 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=120988 SH06_RS18160 WP_000081588.1 3656438..3657430(-) (rpoS) [Escherichia coli K-12 strain K-12 MG1655]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=120988 SH06_RS18160 WP_000081588.1 3656438..3657430(-) (rpoS) [Escherichia coli K-12 strain K-12 MG1655]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715