Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DI45_RS01430 Genome accession   NZ_CP007560
Coordinates   267027..268097 (+) Length   356 a.a.
NCBI ID   WP_047235149.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS743     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 262027..273097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI45_RS01415 (DI45_01470) amiA 262555..264525 (+) 1971 WP_012560447.1 peptide ABC transporter substrate-binding protein Regulator
  DI45_RS01420 (DI45_01475) amiC 264590..266092 (+) 1503 WP_009880667.1 ABC transporter permease Regulator
  DI45_RS01425 (DI45_01480) amiD 266092..267018 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  DI45_RS01430 (DI45_01485) amiE 267027..268097 (+) 1071 WP_047235149.1 ABC transporter ATP-binding protein Regulator
  DI45_RS01435 (DI45_01490) amiF 268090..269013 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DI45_RS10695 - 269051..269140 (-) 90 WP_109821088.1 IS3 family transposase -
  DI45_RS10270 (DI45_01495) - 269161..269406 (-) 246 WP_175393721.1 transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39631.71 Da        Isoelectric Point: 5.8939

>NTDB_id=120825 DI45_RS01430 WP_047235149.1 267027..268097(+) (amiE) [Streptococcus pyogenes strain NGAS743]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSGTHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=120825 DI45_RS01430 WP_047235149.1 267027..268097(+) (amiE) [Streptococcus pyogenes strain NGAS743]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGCAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGGGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.667

100

0.775
  amiE Streptococcus thermophilus LMG 18311

75.556

100

0.764
  amiE Streptococcus thermophilus LMD-9

75.556

100

0.764
  oppD Streptococcus mutans UA159

56.677

94.663

0.537

Multiple sequence alignment