Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BD94_RS00615 Genome accession   NZ_CP007547
Coordinates   128518..129627 (-) Length   369 a.a.
NCBI ID   WP_021347640.1    Uniprot ID   -
Organism   Elizabethkingia anophelis NUHP1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 123518..134627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BD94_RS00590 (BD94_0119) - 124781..125512 (+) 732 WP_009086427.1 DNA alkylation repair protein -
  BD94_RS00595 (BD94_0120) - 125509..125889 (-) 381 WP_021347637.1 group III truncated hemoglobin -
  BD94_RS00600 (BD94_0121) - 125986..126477 (+) 492 WP_009086431.1 YkgJ family cysteine cluster protein -
  BD94_RS00605 (BD94_0122) - 126604..126879 (+) 276 WP_021347639.1 hypothetical protein -
  BD94_RS00610 (BD94_0123) gdhA 126968..128332 (-) 1365 WP_009086437.1 NADP-specific glutamate dehydrogenase -
  BD94_RS00615 (BD94_0124) dprA 128518..129627 (-) 1110 WP_021347640.1 DNA-processing protein DprA Machinery gene
  BD94_RS00620 (BD94_0125) - 129665..130432 (-) 768 WP_009086441.1 rhomboid family intramembrane serine protease -
  BD94_RS00625 (BD94_0126) - 130600..131721 (+) 1122 WP_009086443.1 DUF3078 domain-containing protein -
  BD94_RS00630 (BD94_0127) - 131728..133260 (-) 1533 WP_024565394.1 YifB family Mg chelatase-like AAA ATPase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41245.18 Da        Isoelectric Point: 7.0446

>NTDB_id=120773 BD94_RS00615 WP_021347640.1 128518..129627(-) (dprA) [Elizabethkingia anophelis NUHP1]
MFSEEHLYSIALRHCPQIGDLHFKKIVTTIGSAKEAWSLPRRELVKLYGIGNKIVEDIGKDSHLQFAERELEFCYKNNIQ
ILLSHQGNFPELLYQCDDTPAILYQKGKFDHHRTNISIVGTRKNSKYGKEFITEFLYSLKDNNIQTISGLAIGTDTCAHE
ESLKNNIPTTAILAHGFHILYPNTNRKLADKLLENGGCLFTEFNSSQPPIRESFIQRNRIIAGISPSTIITETAYGGGSV
STANFASIYNREVLALPGSVNDKYSQGCNLLISQNKARIIVSISDTIDYLGLVTKPVEQLPLFHKKEILASLTSDQQLIL
SAITDSPNINPDEIAEKVSLPIYKILPIILDLELLGYIKASSGRQYFPS

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=120773 BD94_RS00615 WP_021347640.1 128518..129627(-) (dprA) [Elizabethkingia anophelis NUHP1]
ATGTTTTCCGAAGAACATCTTTATTCTATAGCACTAAGACATTGCCCGCAAATCGGTGATTTACACTTCAAGAAAATAGT
TACCACAATTGGTTCAGCAAAAGAAGCGTGGAGCCTTCCCCGACGTGAACTTGTCAAATTGTATGGTATCGGAAACAAGA
TAGTGGAAGACATAGGGAAAGATTCCCATTTACAATTTGCAGAAAGAGAACTAGAGTTCTGCTATAAGAATAACATTCAG
ATCCTACTTTCTCATCAGGGAAATTTCCCGGAATTATTATATCAGTGTGATGACACACCAGCTATACTCTATCAGAAAGG
AAAATTTGACCACCACAGGACAAATATTAGTATAGTAGGTACAAGGAAAAATTCGAAGTACGGAAAAGAGTTTATTACCG
AATTTCTGTATTCTCTAAAAGATAACAATATCCAGACAATTAGCGGACTCGCTATTGGTACAGATACTTGCGCACATGAA
GAATCTCTAAAAAACAATATTCCGACAACTGCAATACTCGCACATGGTTTTCATATACTGTATCCCAATACAAACAGAAA
GTTAGCCGACAAATTATTGGAAAATGGAGGATGTCTTTTTACTGAATTCAATTCATCACAGCCACCGATAAGAGAAAGCT
TTATCCAAAGAAACAGAATTATTGCTGGTATATCGCCCTCCACAATCATAACAGAAACGGCTTATGGCGGAGGATCTGTA
AGTACAGCCAACTTTGCCAGCATATATAACCGCGAAGTACTTGCGCTCCCAGGTTCTGTCAATGACAAATACAGCCAAGG
CTGCAACCTTTTAATTTCGCAAAACAAAGCAAGAATTATCGTTTCCATTTCTGACACGATTGACTATCTGGGCCTTGTTA
CCAAGCCTGTGGAACAACTTCCCTTATTTCATAAAAAAGAAATCCTTGCGAGCCTTACATCAGACCAACAACTGATTCTA
TCTGCTATTACGGATTCCCCTAACATAAATCCTGATGAAATTGCCGAAAAAGTTTCTCTCCCCATTTACAAAATTCTTCC
CATAATATTAGATCTGGAACTTTTGGGGTACATTAAAGCCTCTTCCGGGAGACAATATTTCCCAAGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)

DprA winged helix domain (DprA_WH)

(309-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

51.913

99.187

0.515

Multiple sequence alignment