Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA5   Type   Machinery gene
Locus tag   D082_RS07945 Genome accession   NZ_CP007542
Coordinates   1758158..1758688 (+) Length   176 a.a.
NCBI ID   WP_051738930.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6714     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1753158..1763688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D082_RS07910 (D082_17600) - 1753215..1753697 (-) 483 WP_028948182.1 hypothetical protein -
  D082_RS07915 (D082_17610) - 1753735..1754391 (-) 657 WP_028948181.1 peroxiredoxin-like family protein -
  D082_RS07920 (D082_17620) - 1754475..1754852 (-) 378 WP_038530511.1 hypothetical protein -
  D082_RS07925 (D082_17630) - 1754964..1755872 (+) 909 WP_028948179.1 LysR family transcriptional regulator -
  D082_RS07930 (D082_17640) - 1756020..1757198 (+) 1179 WP_028948178.1 DUF58 domain-containing protein -
  D082_RS07935 (D082_17650) - 1757383..1757667 (-) 285 WP_038531490.1 type II toxin-antitoxin system PemK/MazF family toxin -
  D082_RS07940 (D082_17660) - 1757658..1757828 (-) 171 WP_238546655.1 hypothetical protein -
  D082_RS07945 pilA/pilA5 1758158..1758688 (+) 531 WP_051738930.1 hypothetical protein Machinery gene
  D082_RS07950 (D082_17680) - 1758729..1759280 (+) 552 WP_051738767.1 Tfp pilus assembly protein FimT/FimU -
  D082_RS19025 (D082_17690) - 1759366..1759518 (-) 153 WP_238546656.1 hypothetical protein -
  D082_RS07955 (D082_17700) - 1759553..1759951 (+) 399 WP_238546657.1 hypothetical protein -
  D082_RS07960 (D082_17710) - 1759963..1760901 (+) 939 WP_028948174.1 PilW family protein -
  D082_RS07965 (D082_17720) - 1760928..1761623 (+) 696 WP_028948173.1 alpha/beta fold hydrolase -
  D082_RS07970 (D082_17730) - 1761629..1762447 (-) 819 WP_028948172.1 HpsJ family protein -
  D082_RS07975 (D082_17740) - 1762562..1763302 (-) 741 WP_028948171.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19013.90 Da        Isoelectric Point: 10.4245

>NTDB_id=120733 D082_RS07945 WP_051738930.1 1758158..1758688(+) (pilA/pilA5) [Synechocystis sp. PCC 6714]
MSKAIFPQSFGHTRSLLSLTRQSVSQGFTMFEVLIALMISFLFLTGTLNAMVMATMMRVRAERQAQAGYWIKEDLERVRA
LAANFNPSTNNGCSTSTVGEAFRTNSTANVGLASLTAPANRPILGRTASLTRTATAVGNVLQLTYTVRNTEITDTNKNIL
ASLYTEVLPAAALTCP

Nucleotide


Download         Length: 531 bp        

>NTDB_id=120733 D082_RS07945 WP_051738930.1 1758158..1758688(+) (pilA/pilA5) [Synechocystis sp. PCC 6714]
ATGTCTAAGGCTATTTTCCCCCAGTCTTTTGGTCACACTCGTTCGCTGCTCAGCTTGACCCGTCAGTCGGTCAGCCAAGG
TTTTACGATGTTCGAGGTGCTTATTGCCTTGATGATTTCCTTTTTATTTCTAACTGGAACTCTCAATGCCATGGTGATGG
CAACGATGATGCGGGTGCGGGCGGAAAGACAGGCCCAAGCCGGCTATTGGATTAAAGAAGACTTGGAAAGAGTTAGAGCA
TTGGCGGCAAATTTTAATCCTTCTACCAACAATGGATGTTCTACCAGCACCGTAGGGGAAGCTTTCAGAACGAATAGCAC
GGCAAATGTAGGGCTCGCGAGCTTAACTGCTCCCGCCAATAGACCAATTCTAGGAAGAACTGCAAGCTTGACCCGAACGG
CCACCGCTGTTGGCAATGTTCTTCAGCTTACCTACACCGTTAGGAACACTGAAATTACAGACACAAATAAAAATATTCTC
GCCAGTCTTTACACTGAAGTTCTTCCCGCTGCAGCCCTTACCTGTCCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA5 Synechocystis sp. PCC 6803

71.053

86.364

0.614

Multiple sequence alignment