Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   X998_RS01640 Genome accession   NZ_CP007539
Coordinates   298623..299339 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain FDAARGOS_5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 293623..304339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X998_RS01620 (X998_2017) - 294717..295667 (+) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -
  X998_RS01625 (X998_2016) - 295816..297300 (+) 1485 WP_000141406.1 sucrose-6-phosphate hydrolase -
  X998_RS01630 (X998_2015) - 297297..298256 (+) 960 WP_001253312.1 carbohydrate kinase family protein -
  X998_RS01635 (X998_03725) - 298444..298551 (-) 108 WP_001790167.1 hypothetical protein -
  X998_RS01640 (X998_2014) agrA 298623..299339 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  X998_RS01645 (X998_03730) agrC 299358..300650 (-) 1293 WP_010956571.1 quorum-sensing sensor histidine kinase AgrC -
  X998_RS01650 (X998_2012) agrD 300675..300815 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  X998_RS01655 (X998_2011) agrB 300812..301381 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  X998_RS14790 hld 301671..301751 (+) 81 WP_000046022.1 delta-hemolysin -
  X998_RS01665 (X998_2009) - 302348..303133 (-) 786 WP_000867960.1 carbon-nitrogen family hydrolase -
  X998_RS01670 (X998_2008) - 303494..304120 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=120658 X998_RS01640 WP_000688492.1 298623..299339(-) (agrA) [Staphylococcus aureus strain FDAARGOS_5]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=120658 X998_RS01640 WP_000688492.1 298623..299339(-) (agrA) [Staphylococcus aureus strain FDAARGOS_5]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment