Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPAP1_RS09295 Genome accession   NZ_CP007537
Coordinates   1823982..1824695 (+) Length   237 a.a.
NCBI ID   WP_029714110.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain AP1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1818982..1829695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAP1_RS09285 (SPAP1_09275) treC 1820052..1821680 (-) 1629 WP_010922745.1 alpha,alpha-phosphotrehalase -
  SPAP1_RS09290 (SPAP1_09280) treP 1821747..1823771 (-) 2025 WP_010922746.1 PTS system trehalose-specific EIIBC component -
  SPAP1_RS09295 (SPAP1_09285) treR 1823982..1824695 (+) 714 WP_029714110.1 trehalose operon repressor Regulator
  SPAP1_RS09300 (SPAP1_09290) - 1824974..1825240 (-) 267 WP_076640006.1 helix-turn-helix domain-containing protein -
  SPAP1_RS09305 (SPAP1_09295) - 1825499..1826356 (+) 858 WP_010922747.1 VOC family protein -
  SPAP1_RS09310 (SPAP1_09300) yaaA 1826398..1827129 (+) 732 WP_010922748.1 peroxide stress protein YaaA -
  SPAP1_RS09315 (SPAP1_09305) nrdG 1827303..1827917 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SPAP1_RS09320 (SPAP1_09310) - 1827917..1828426 (-) 510 WP_011018311.1 GNAT family N-acetyltransferase -
  SPAP1_RS09325 (SPAP1_09315) - 1828435..1829370 (-) 936 WP_010922750.1 Gfo/Idh/MocA family oxidoreductase -
  SPAP1_RS10380 - 1829399..1829545 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27606.77 Da        Isoelectric Point: 9.6307

>NTDB_id=120649 SPAP1_RS09295 WP_029714110.1 1823982..1824695(+) (treR) [Streptococcus pyogenes strain AP1]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLVLKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=120649 SPAP1_RS09295 WP_029714110.1 1823982..1824695(+) (treR) [Streptococcus pyogenes strain AP1]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTGTCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.949

98.734

0.671

Multiple sequence alignment