Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | SE88_RS01360 | Genome accession | NZ_CP010436 |
| Coordinates | 272580..275150 (+) | Length | 856 a.a. |
| NCBI ID | WP_001048043.1 | Uniprot ID | P71404 |
| Organism | Helicobacter pylori strain 26695-1MET | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 267580..280150
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE88_RS01335 (SE88_01335) | xseA | 268034..269296 (+) | 1263 | WP_000382848.1 | exodeoxyribonuclease VII large subunit | - |
| SE88_RS01340 (SE88_01340) | - | 269332..270468 (-) | 1137 | WP_025444699.1 | DNA methyltransferase | - |
| SE88_RS09140 (SE88_01345) | - | 270479..270877 (-) | 399 | WP_001160132.1 | hypothetical protein | - |
| SE88_RS01350 (SE88_01350) | - | 271065..271752 (+) | 688 | Protein_252 | BsaWI family type II restriction enzyme | - |
| SE88_RS01355 (SE88_01355) | - | 271749..272507 (+) | 759 | WP_000806072.1 | DNA-methyltransferase | - |
| SE88_RS01360 (SE88_01360) | clpC | 272580..275150 (+) | 2571 | WP_001048043.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| SE88_RS01365 (SE88_01365) | - | 275207..275926 (+) | 720 | WP_001863037.1 | cytochrome c biogenesis protein CcdA | - |
| SE88_RS01370 (SE88_01370) | - | 275936..277072 (+) | 1137 | WP_000924910.1 | amidohydrolase family protein | - |
| SE88_RS01375 (SE88_01375) | mqnF | 277057..278286 (+) | 1230 | WP_001155847.1 | aminofutalosine deaminase | - |
| SE88_RS01380 (SE88_01380) | - | 278347..278589 (+) | 243 | WP_000780038.1 | nuclease | - |
| SE88_RS01385 (SE88_01385) | miaB | 278599..279912 (+) | 1314 | WP_000870176.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
Sequence
Protein
Download Length: 856 a.a. Molecular weight: 96683.63 Da Isoelectric Point: 6.2603
>NTDB_id=120579 SE88_RS01360 WP_001048043.1 272580..275150(+) (clpC) [Helicobacter pylori strain 26695-1MET]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKMPVDIQALRLSVQSELNKFAKVSQISK
QNIQLNQALIQSLENAQGLMAKRGDSFIATDVYLLANMGLFESVLKPYLDAKELQKTLESLRKGRTIQDKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIMNKEVPKTLLNKRVIALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYLEK
HAMSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGALLEENLSEAEKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAVINIVGILFENIQKKALERGINITLDEEAKEL
IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKVKENDSVAFVVENNEIVPKIK
MNLFEKMTDQLHETLDSALALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKMPVDIQALRLSVQSELNKFAKVSQISK
QNIQLNQALIQSLENAQGLMAKRGDSFIATDVYLLANMGLFESVLKPYLDAKELQKTLESLRKGRTIQDKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIMNKEVPKTLLNKRVIALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYLEK
HAMSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGALLEENLSEAEKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAVINIVGILFENIQKKALERGINITLDEEAKEL
IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKVKENDSVAFVVENNEIVPKIK
Nucleotide
Download Length: 2571 bp
>NTDB_id=120579 SE88_RS01360 WP_001048043.1 272580..275150(+) (clpC) [Helicobacter pylori strain 26695-1MET]
ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTTTAGCCTTACACCATAAAAA
CGCTGAAGTAACGCCCATGCACATGCTTTTTGCCATGCTCAATAATTCCCAAGGCATTCTCATTCAAGCCTTACAAAAAA
TGCCTGTGGATATTCAAGCTTTAAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTCGCTAAAGTTTCACAAATCAGCAAG
CAAAATATCCAATTAAACCAAGCTTTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAAGGGGCGATTCTTT
CATCGCTACCGATGTGTATCTTTTGGCGAATATGGGTCTTTTTGAAAGCGTTCTAAAGCCTTATTTAGACGCTAAGGAAT
TGCAAAAAACTTTAGAATCTTTAAGAAAAGGCAGGACTATTCAGGATAAAAACGACGATTCCAATTTGGAAAGTTTGGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCCTAGAAAATAAGCTGGATCCCGTGATCGGAAGAGATGAAGAAATCATTCG
CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTGGGCGAGCCTGGAGTGGGGAAAACGGCGGTTG
TGGAAGGGTTAGCCCAACGCATTATGAATAAAGAAGTGCCTAAAACGCTTTTAAACAAACGAGTTATTGCTTTAGATCTA
AGCTTATTGGTGGCTGGAGCGAAATACAGAGGCGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG
CGCGAATGTGATTTTATTTATTGATGAAATCCACACGATCGTGGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCTA
ACATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTAAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCATTGCAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAGATTTT
AAGAGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTCATAGCGAGCGCTAAACTCT
CTAGCCGTTATATTACCGATAGGTTTTTACCCGATAAGGCGATTGATTTGATTGATGAGGGGGCGGCTCAATTAAAAATG
CAAATGGAATCAGAGCCGGCAAAACTCTCTAGCGTTAAACGCTCCATCCAAAGATTAGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC
AATTAGAAGCGCAATTTGAAAACGAAAAAGAAGTGTTTAAAGAAATTTCACGCTTGAAAATGGAAATGGAAAGTTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAAGAATTGCAACGTAAATGGGAAGCGATGCAACAAAACGGGGCGTTATTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCACATCCCCGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGGGTGGTAGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCCGGCCTTAGCGATAGCAACAAGCCCATAGGGAGTTTCCTCTTTTTAGGGCCAACAGGCGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATACGAATTGACATGAGCGAATACCTAGAAAAG
CATGCCATGAGCCGTCTTATTGGGGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTACG
CAGAAAACCTTATAGCGTGGTGCTGTTAGACGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTCTTGTTGCAGGTTT
TAGATGAAGGACATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATCTTAACCAGCAATGTG
GCTAGTGGTGCGCTTTTGGAAGAAAATTTGAGTGAAGCCGAGAAGCAAAAAGCGATTAAAGAGAGCTTGAGGCAATTCTT
TAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGTCATGCTGTCATTAATATCGTGG
GGATACTTTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCCTAGACGAAGAGGCAAAAGAATTG
ATCGCCGAAGCGGGATTTGACAGATTCTATGGCGCTAGACCCTTAAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAGGATAAAGTTAAAGAGAATGACAGCGTGGCATTTGTGGTAGAAAATAACGAGATTGTGCCTA
AGATTAAGTGA
ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTTTAGCCTTACACCATAAAAA
CGCTGAAGTAACGCCCATGCACATGCTTTTTGCCATGCTCAATAATTCCCAAGGCATTCTCATTCAAGCCTTACAAAAAA
TGCCTGTGGATATTCAAGCTTTAAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTCGCTAAAGTTTCACAAATCAGCAAG
CAAAATATCCAATTAAACCAAGCTTTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAAGGGGCGATTCTTT
CATCGCTACCGATGTGTATCTTTTGGCGAATATGGGTCTTTTTGAAAGCGTTCTAAAGCCTTATTTAGACGCTAAGGAAT
TGCAAAAAACTTTAGAATCTTTAAGAAAAGGCAGGACTATTCAGGATAAAAACGACGATTCCAATTTGGAAAGTTTGGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCCTAGAAAATAAGCTGGATCCCGTGATCGGAAGAGATGAAGAAATCATTCG
CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTGGGCGAGCCTGGAGTGGGGAAAACGGCGGTTG
TGGAAGGGTTAGCCCAACGCATTATGAATAAAGAAGTGCCTAAAACGCTTTTAAACAAACGAGTTATTGCTTTAGATCTA
AGCTTATTGGTGGCTGGAGCGAAATACAGAGGCGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG
CGCGAATGTGATTTTATTTATTGATGAAATCCACACGATCGTGGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCTA
ACATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTAAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCATTGCAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAGATTTT
AAGAGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTCATAGCGAGCGCTAAACTCT
CTAGCCGTTATATTACCGATAGGTTTTTACCCGATAAGGCGATTGATTTGATTGATGAGGGGGCGGCTCAATTAAAAATG
CAAATGGAATCAGAGCCGGCAAAACTCTCTAGCGTTAAACGCTCCATCCAAAGATTAGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC
AATTAGAAGCGCAATTTGAAAACGAAAAAGAAGTGTTTAAAGAAATTTCACGCTTGAAAATGGAAATGGAAAGTTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAAGAATTGCAACGTAAATGGGAAGCGATGCAACAAAACGGGGCGTTATTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCACATCCCCGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGGGTGGTAGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCCGGCCTTAGCGATAGCAACAAGCCCATAGGGAGTTTCCTCTTTTTAGGGCCAACAGGCGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATACGAATTGACATGAGCGAATACCTAGAAAAG
CATGCCATGAGCCGTCTTATTGGGGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTACG
CAGAAAACCTTATAGCGTGGTGCTGTTAGACGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTCTTGTTGCAGGTTT
TAGATGAAGGACATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATCTTAACCAGCAATGTG
GCTAGTGGTGCGCTTTTGGAAGAAAATTTGAGTGAAGCCGAGAAGCAAAAAGCGATTAAAGAGAGCTTGAGGCAATTCTT
TAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGTCATGCTGTCATTAATATCGTGG
GGATACTTTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCCTAGACGAAGAGGCAAAAGAATTG
ATCGCCGAAGCGGGATTTGACAGATTCTATGGCGCTAGACCCTTAAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAGGATAAAGTTAAAGAGAATGACAGCGTGGCATTTGTGGTAGAAAATAACGAGATTGTGCCTA
AGATTAAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
42.955 |
100 |
0.438 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
41.023 |
100 |
0.422 |