Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | BL01_RS12140 | Genome accession | NZ_CP007535 |
| Coordinates | 2559814..2560194 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AC29 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2554814..2565194
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BL01_RS12110 (BL01_12270) | tadA | 2554932..2555435 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| BL01_RS12115 (BL01_12275) | - | 2555442..2556566 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| BL01_RS12120 (BL01_12280) | ung | 2556563..2557276 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| BL01_RS12125 (BL01_12285) | - | 2557327..2557923 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| BL01_RS12130 (BL01_12290) | gspK | 2558154..2559113 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| BL01_RS12135 (BL01_12295) | xcpW | 2559113..2559814 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| BL01_RS12140 (BL01_12300) | xcpV | 2559814..2560194 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| BL01_RS12145 (BL01_12305) | - | 2560184..2560738 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| BL01_RS12150 (BL01_12310) | - | 2560748..2561356 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| BL01_RS12155 (BL01_12315) | - | 2561394..2562167 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| BL01_RS12160 (BL01_12320) | - | 2562185..2562526 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| BL01_RS12165 (BL01_12325) | - | 2562538..2563518 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| BL01_RS12170 (BL01_12330) | kdsB | 2563530..2564291 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=120579 BL01_RS12140 WP_000836911.1 2559814..2560194(-) (xcpV) [Acinetobacter baumannii strain AC29]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=120579 BL01_RS12140 WP_000836911.1 2559814..2560194(-) (xcpV) [Acinetobacter baumannii strain AC29]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |