Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   SE88_RS00555 Genome accession   NZ_CP010436
Coordinates   112828..113295 (-) Length   155 a.a.
NCBI ID   WP_000856671.1    Uniprot ID   O24931
Organism   Helicobacter pylori strain 26695-1MET     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 107828..118295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE88_RS00540 (SE88_00540) - 108215..108994 (-) 780 WP_000922020.1 glycosyltransferase family 2 protein -
  SE88_RS00545 (SE88_00545) tlpB 109025..110722 (-) 1698 WP_000971620.1 methyl-accepting chemotaxis protein TlpB -
  SE88_RS00550 (SE88_00550) - 110928..112673 (-) 1746 WP_000737638.1 bifunctional metallophosphatase/5'-nucleotidase -
  SE88_RS00555 (SE88_00555) luxS 112828..113295 (-) 468 WP_000856671.1 S-ribosylhomocysteine lyase Regulator
  SE88_RS00560 (SE88_00560) - 113333..114475 (-) 1143 WP_001242837.1 cystathionine gamma-synthase -
  SE88_RS00565 (SE88_00565) - 114500..115417 (-) 918 WP_042964654.1 O-acetylserine-dependent cystathionine beta-synthase -
  SE88_RS00570 (SE88_00570) - 115531..116113 (+) 583 Protein_102 hypothetical protein -
  SE88_RS00575 (SE88_00575) dnaK 116362..118224 (-) 1863 WP_000521014.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17655.11 Da        Isoelectric Point: 6.6039

>NTDB_id=120575 SE88_RS00555 WP_000856671.1 112828..113295(-) (luxS) [Helicobacter pylori strain 26695-1MET]
MKTPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKDLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=120575 SE88_RS00555 WP_000856671.1 112828..113295(-) (luxS) [Helicobacter pylori strain 26695-1MET]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACA
TGCCTAGCCTACATTCTTTAGAGCATTTAGTCGCTGAAATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACAGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
CATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCTAAGGATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O24931

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381

Multiple sequence alignment