Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RT44_RS03805 Genome accession   NZ_CP010402
Coordinates   789932..791014 (+) Length   360 a.a.
NCBI ID   WP_001813867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GR2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784932..796014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RT44_RS03785 (RT44_03790) - 785302..786372 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  RT44_RS03790 (RT44_03795) - 786690..787745 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  RT44_RS03795 (RT44_03800) - 787917..788558 (-) 642 WP_000192949.1 YigZ family protein -
  RT44_RS03800 (RT44_03805) fakB1 788702..789568 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  RT44_RS03805 (RT44_03810) comFA 789932..791014 (+) 1083 WP_001813867.1 DEAD/DEAH box helicase Machinery gene
  RT44_RS03810 (RT44_03815) - 791007..791681 (+) 675 WP_001057968.1 ComF family protein -
  RT44_RS03815 (RT44_03820) raiA 791742..792314 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  RT44_RS03820 (RT44_03825) secA 792728..795259 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  RT44_RS03825 (RT44_03830) - 795301..795405 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41958.48 Da        Isoelectric Point: 9.6797

>NTDB_id=120451 RT44_RS03805 WP_001813867.1 789932..791014(+) (comFA) [Staphylococcus aureus strain GR2]
MDNVTRYKITESSQSSSQAYYHLSFALSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPISMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYCYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=120451 RT44_RS03805 WP_001813867.1 789932..791014(+) (comFA) [Staphylococcus aureus strain GR2]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGCATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTATATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATTGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.349

93.889

0.369

Multiple sequence alignment