Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RT44_RS03720 Genome accession   NZ_CP010402
Coordinates   773354..774325 (+) Length   323 a.a.
NCBI ID   WP_000876319.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GR2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 768354..779325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RT44_RS03700 (RT44_03705) nrdI 769424..769822 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  RT44_RS03705 (RT44_03710) nrdE 769785..771890 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  RT44_RS03710 (RT44_03715) nrdF 772008..772979 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  RT44_RS03715 (RT44_03720) - 773160..773315 (+) 156 WP_000499195.1 hypothetical protein -
  RT44_RS03720 (RT44_03725) ceuB 773354..774325 (+) 972 WP_000876319.1 ABC transporter permease Machinery gene
  RT44_RS03725 (RT44_03730) - 774312..775268 (+) 957 WP_001245577.1 iron chelate uptake ABC transporter family permease subunit -
  RT44_RS03730 (RT44_03735) - 775265..776026 (+) 762 WP_000616840.1 ABC transporter ATP-binding protein -
  RT44_RS03735 (RT44_03740) - 776145..777173 (+) 1029 WP_000754443.1 siderophore ABC transporter substrate-binding protein -
  RT44_RS03740 (RT44_03745) - 777490..777804 (-) 315 WP_001127269.1 CHY zinc finger protein -
  RT44_RS03745 (RT44_03750) murB 777822..778745 (-) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35610.18 Da        Isoelectric Point: 10.1194

>NTDB_id=120450 RT44_RS03720 WP_000876319.1 773354..774325(+) (ceuB) [Staphylococcus aureus strain GR2]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFVNHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=120450 RT44_RS03720 WP_000876319.1 773354..774325(+) (ceuB) [Staphylococcus aureus strain GR2]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTCTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGTTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.188

99.071

0.467

Multiple sequence alignment