Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   NMA510612_RS04535 Genome accession   NZ_CP007524
Coordinates   874588..875586 (-) Length   332 a.a.
NCBI ID   WP_002214152.1    Uniprot ID   X5F838
Organism   Neisseria meningitidis strain 510612     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 869588..880586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA510612_RS04515 (NMA510612_0998) - 871069..871695 (-) 627 WP_002246057.1 phosphoribosylanthranilate isomerase -
  NMA510612_RS04520 (NMA510612_0999) greB 871754..872245 (-) 492 WP_002236813.1 transcription elongation factor GreB -
  NMA510612_RS04525 (NMA510612_1000) purF 872345..873889 (-) 1545 WP_002246058.1 amidophosphoribosyltransferase -
  NMA510612_RS04530 (NMA510612_1002) - 874098..874595 (-) 498 WP_002237644.1 CvpA family protein -
  NMA510612_RS04535 (NMA510612_1003) tpc 874588..875586 (-) 999 WP_002214152.1 cell division protein FtsN Machinery gene
  NMA510612_RS04540 (NMA510612_1004) folC 875599..876873 (-) 1275 WP_002246059.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  NMA510612_RS04545 (NMA510612_1005) - 876904..877350 (-) 447 WP_002246060.1 protein YgfX -
  NMA510612_RS04550 (NMA510612_1006) - 877355..877714 (-) 360 WP_002233690.1 hypothetical protein -
  NMA510612_RS04555 (NMA510612_1007) - 877787..878515 (-) 729 WP_002233691.1 amino acid ABC transporter ATP-binding protein -
  NMA510612_RS04565 (NMA510612_1010) rsmA 878688..879467 (-) 780 WP_002249638.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  NMA510612_RS04570 (NMA510612_1011) - 879664..880353 (+) 690 WP_002226537.1 uracil-DNA glycosylase family protein -

Sequence


Protein


Download         Length: 332 a.a.        Molecular weight: 35520.89 Da        Isoelectric Point: 10.1759

>NTDB_id=120307 NMA510612_RS04535 WP_002214152.1 874588..875586(-) (tpc) [Neisseria meningitidis strain 510612]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=120307 NMA510612_RS04535 WP_002214152.1 874588..875586(-) (tpc) [Neisseria meningitidis strain 510612]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains


Predicted by InterproScan.

(259-330)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB X5F838

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.884

100

0.937


Multiple sequence alignment