Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CY96_RS26250 Genome accession   NZ_CP007512
Coordinates   5148538..5149665 (+) Length   375 a.a.
NCBI ID   WP_000470745.1    Uniprot ID   A0A9W5QA17
Organism   Bacillus bombysepticus str. Wang     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5143538..5154665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CY96_RS26220 (CY96_26570) spoIIIJ 5143577..5144344 (-) 768 WP_000727737.1 YidC family membrane integrase SpoIIIJ -
  CY96_RS26225 (CY96_26575) rnpA 5144397..5144744 (-) 348 WP_000726622.1 ribonuclease P protein component -
  CY96_RS26230 (CY96_26580) rpmH 5144821..5144955 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  CY96_RS26235 (CY96_26585) dnaA 5145520..5146860 (+) 1341 WP_044585054.1 chromosomal replication initiator protein DnaA -
  CY96_RS26240 (CY96_26590) dnaN 5147040..5148185 (+) 1146 WP_044585055.1 DNA polymerase III subunit beta -
  CY96_RS26245 (CY96_26595) yaaA 5148313..5148525 (+) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  CY96_RS26250 (CY96_26600) recF 5148538..5149665 (+) 1128 WP_000470745.1 DNA replication/repair protein RecF Machinery gene
  CY96_RS26255 (CY96_26605) gyrB 5149704..5151626 (+) 1923 WP_000435982.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CY96_RS26260 (CY96_26610) gyrA 5151715..5154186 (+) 2472 WP_001282864.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.67 Da        Isoelectric Point: 6.6001

>NTDB_id=120234 CY96_RS26250 WP_000470745.1 5148538..5149665(+) (recF) [Bacillus bombysepticus str. Wang]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=120234 CY96_RS26250 WP_000470745.1 5148538..5149665(+) (recF) [Bacillus bombysepticus str. Wang]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAGGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment