Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CY96_RS24715 Genome accession   NZ_CP007512
Coordinates   4820938..4822287 (-) Length   449 a.a.
NCBI ID   WP_044584984.1    Uniprot ID   A0A9W3KY97
Organism   Bacillus bombysepticus str. Wang     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4815938..4827287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CY96_RS24680 (CY96_24985) - 4815982..4816677 (-) 696 WP_000466510.1 hypothetical protein -
  CY96_RS24685 (CY96_24990) - 4816664..4817452 (-) 789 WP_000120044.1 hypothetical protein -
  CY96_RS24690 (CY96_24995) - 4817480..4818049 (-) 570 WP_044584982.1 hypothetical protein -
  CY96_RS24695 (CY96_25000) - 4818167..4818640 (-) 474 WP_000511548.1 hypothetical protein -
  CY96_RS24700 (CY96_25005) raiA 4819045..4819587 (-) 543 WP_000671186.1 ribosome-associated translation inhibitor RaiA -
  CY96_RS24705 (CY96_25010) cspC 4819910..4820107 (-) 198 WP_001990088.1 cold shock protein CspC -
  CY96_RS24710 (CY96_25015) - 4820234..4820938 (-) 705 WP_044584983.1 ComF family protein -
  CY96_RS24715 (CY96_25020) comFA 4820938..4822287 (-) 1350 WP_044584984.1 ATP-dependent helicase ComFA Machinery gene
  CY96_RS24720 (CY96_25025) - 4822415..4823842 (-) 1428 WP_044584985.1 C40 family peptidase -
  CY96_RS24725 (CY96_25030) - 4823991..4824305 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  CY96_RS24730 (CY96_25035) - 4824478..4825320 (-) 843 WP_000684725.1 DegV family protein -
  CY96_RS24735 (CY96_25040) - 4825557..4826192 (+) 636 WP_000926665.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51143.07 Da        Isoelectric Point: 9.9349

>NTDB_id=120228 CY96_RS24715 WP_044584984.1 4820938..4822287(-) (comFA) [Bacillus bombysepticus str. Wang]
MLAGKQLLLEELSSDLQRELNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNLNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIQIAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADRMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIISGRYHRHPLPVPLFCWCGNWKKNLMHKRIPRVLLQWLQTYLNKNFPIFL
FVPHVRYIEEISLLLKLLNNRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=120228 CY96_RS24715 WP_044584984.1 4820938..4822287(-) (comFA) [Bacillus bombysepticus str. Wang]
ATGCTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAACTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGAATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATATACAGATAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACTACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCGAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACTTGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTATTTCTGGACGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGTGGGAATTGGAAAAAAA
ACCTCATGCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAATTTCCCTATTTTTTTA
TTCGTCCCCCATGTGCGATATATAGAAGAAATAAGCTTGTTGTTAAAACTATTAAATAATCGAATTGAAGGTGTACATGC
AGAAGATCCGGGGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTCGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCGCCGTATGGAGAGGTCATTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATTGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.357

98.441

0.506
  comFA Latilactobacillus sakei subsp. sakei 23K

41.687

89.755

0.374

Multiple sequence alignment