Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   RR32_RS03165 Genome accession   NZ_CP010368
Coordinates   656797..657312 (-) Length   171 a.a.
NCBI ID   WP_025467915.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 651797..662312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS03140 (RR32_03145) - 652338..653981 (+) 1644 WP_004712033.1 nitrite/sulfite reductase -
  RR32_RS03145 (RR32_03150) - 653974..654459 (+) 486 WP_017394128.1 DUF934 domain-containing protein -
  RR32_RS03150 (RR32_03155) - 654538..654891 (+) 354 WP_002051463.1 DMT family transporter -
  RR32_RS03155 (RR32_03160) - 654944..655387 (-) 444 WP_002051396.1 VOC family protein -
  RR32_RS03160 (RR32_03165) - 655513..656688 (-) 1176 WP_004712038.1 thiolase family protein -
  RR32_RS03165 (RR32_03170) fimT 656797..657312 (-) 516 WP_025467915.1 GspH/FimT family pseudopilin Machinery gene
  RR32_RS03170 (RR32_03175) omp38 657692..658744 (+) 1053 WP_002051401.1 outer membrane protein Omp38 -
  RR32_RS19960 (RR32_03180) - 658872..659030 (-) 159 WP_002051090.1 hypothetical protein -
  RR32_RS03180 (RR32_03185) - 659034..660239 (-) 1206 WP_039246441.1 RtcB family protein -
  RR32_RS03185 (RR32_03190) - 660517..661977 (-) 1461 WP_031955766.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19424.58 Da        Isoelectric Point: 8.5007

>NTDB_id=120224 RR32_RS03165 WP_025467915.1 656797..657312(-) (fimT) [Acinetobacter nosocomialis strain 6411]
MFRSPGFTIVELSITLVILVIMSVIAIPLYHQFMASVELKNTSRVLTIHIQKAKSDAIIQHKNIVLCPSSDQVICNTDWN
KHLISFVDSNRNLQHDLNEELLTSIDLNHTYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLVLSKM
GHVRVEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=120224 RR32_RS03165 WP_025467915.1 656797..657312(-) (fimT) [Acinetobacter nosocomialis strain 6411]
ATGTTTAGATCTCCTGGTTTTACTATAGTTGAGCTCTCTATAACCCTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACTTCGCGTGTACTCACAATTCATATACAAAAAGCCA
AATCGGACGCAATTATTCAGCATAAGAACATTGTTCTGTGTCCAAGTTCAGATCAGGTAATCTGTAATACAGATTGGAAT
AAACACTTAATCAGCTTCGTAGATAGTAACCGCAATCTACAGCATGATTTAAATGAAGAATTATTAACCTCTATAGATCT
TAACCATACTTATGGTTCTATGAAATTACAACGTTTTGGTAAAAAACAAAATAGTATTATTTTTCAAGGAAGCTCGGGAC
TTCCAATCGAGTCTAATGGTAGTTTTATTTACTGTTCTTATGATCAGCTTAAAAATTTTAAATTAGTTCTTAGCAAAATG
GGGCATGTACGTGTCGAAGAATTAAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(49-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427

Multiple sequence alignment