Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RR32_RS01755 Genome accession   NZ_CP010368
Coordinates   380726..381190 (+) Length   154 a.a.
NCBI ID   WP_039246158.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375726..386190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS01740 (RR32_01745) - 375770..376552 (+) 783 WP_002051645.1 pilus assembly PilX family protein -
  RR32_RS01745 (RR32_01750) - 376568..380242 (+) 3675 WP_039246152.1 PilC/PilY family type IV pilus protein -
  RR32_RS01750 (RR32_01755) comE 380256..380732 (+) 477 WP_039246155.1 type IV pilin protein Machinery gene
  RR32_RS01755 (RR32_01760) comF 380726..381190 (+) 465 WP_039246158.1 type IV pilin protein Machinery gene
  RR32_RS01760 (RR32_01765) rpsP 381338..381589 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RR32_RS01765 (RR32_01770) rimM 381609..382157 (+) 549 WP_039246162.1 ribosome maturation factor RimM -
  RR32_RS01770 (RR32_01775) trmD 382204..382959 (+) 756 WP_006582565.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RR32_RS01775 (RR32_01780) rplS 383175..383543 (+) 369 WP_002051668.1 50S ribosomal protein L19 -
  RR32_RS01780 (RR32_01785) - 383595..384536 (-) 942 WP_080594638.1 lipase family alpha/beta hydrolase -
  RR32_RS01785 (RR32_01790) - 384651..385685 (-) 1035 WP_039246173.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16792.26 Da        Isoelectric Point: 8.9643

>NTDB_id=120219 RR32_RS01755 WP_039246158.1 380726..381190(+) (comF) [Acinetobacter nosocomialis strain 6411]
MVNKIKGFTLIELMIVVAIIAILVAIAYPSYQEYIRRTNRADMQTTLQQIAMHIQRYKIANFRVTGATSSDLNIATSYPI
QGTPLYTVNLAPVTAGALNAEAWILTATPIANTSQSGDGHIVLNYRGERCWTKGTDINNGTACVPSATSNWDGK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=120219 RR32_RS01755 WP_039246158.1 380726..381190(+) (comF) [Acinetobacter nosocomialis strain 6411]
GTGGTAAATAAAATAAAAGGCTTTACATTAATTGAGCTAATGATTGTTGTAGCTATTATCGCGATTTTAGTGGCGATAGC
TTACCCCTCTTATCAAGAATATATTCGTCGTACTAATCGTGCGGATATGCAAACTACGTTGCAACAGATTGCTATGCATA
TCCAACGCTACAAAATTGCAAATTTTAGAGTAACGGGTGCAACGAGTTCTGATTTAAATATTGCCACTTCTTATCCTATA
CAAGGCACACCTCTTTATACAGTCAATTTGGCTCCAGTGACAGCTGGAGCTTTAAATGCGGAAGCATGGATATTGACCGC
GACGCCGATTGCAAATACTTCGCAGTCCGGTGATGGGCATATTGTTTTAAATTATCGTGGTGAGCGTTGCTGGACAAAGG
GAACTGATATTAACAATGGTACGGCTTGCGTTCCTTCTGCAACATCAAATTGGGATGGTAAATAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-114)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

48.649

96.104

0.468
  pilE Acinetobacter baumannii D1279779

47.26

94.805

0.448

Multiple sequence alignment