Detailed information NTG0120197

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: CY96_RS04980
• Genome accession: NZ_CP007512
• Coordinates: 985053..987653 (+)
• Length: 866 a.a.
• NCBI ID: WP_000365398.1
• Uniprot ID: A0A9W3L475
• Organism: Bacillus bombysepticus str. Wang
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 980053..992653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CY96_RS04940 (CY96_05015)	prsA	980824..981681 (-)	858	WP_001214202.1	peptidylprolyl isomerase PrsA	-
CY96_RS04945	-	981811..981942 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
CY96_RS04950 (CY96_05025)	-	982043..982900 (+)	858	WP_000364431.1	YitT family protein	-
CY96_RS04955 (CY96_05030)	-	982926..983123 (-)	198	WP_000527407.1	DUF3813 domain-containing protein	-
CY96_RS04960 (CY96_05035)	-	983124..983264 (-)	141	WP_000516816.1	hypothetical protein	-
CY96_RS04965 (CY96_05040)	-	983370..984179 (-)	810	WP_044584223.1	Cof-type HAD-IIB family hydrolase	-
CY96_RS04975 (CY96_05045)	-	984670..984849 (+)	180	WP_000531421.1	YjzC family protein	-
CY96_RS04980 (CY96_05050)	clpC	985053..987653 (+)	2601	WP_000365398.1	ATP-dependent chaperone ClpB	Regulator
CY96_RS04985 (CY96_05055)	-	987693..987875 (-)	183	WP_001211116.1	YjzD family protein	-
CY96_RS04990 (CY96_05060)	-	988032..988766 (+)	735	WP_000028714.1	hydrolase	-
CY96_RS04995 (CY96_05065)	-	988796..989668 (+)	873	WP_001986101.1	NAD(P)-dependent oxidoreductase	-
CY96_RS05000 (CY96_05070)	comZ	989723..989899 (+)	177	WP_001986215.1	ComZ family protein	Regulator
CY96_RS05005 (CY96_05075)	fabH	990120..991052 (+)	933	WP_001100533.1	beta-ketoacyl-ACP synthase III	-
CY96_RS05010 (CY96_05080)	fabF	991084..992322 (+)	1239	WP_000412656.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97391.35 Da
• Isoelectric Point: 5.1555

>NTDB_id=120197 CY96_RS04980 WP_000365398.1 985053..987653(+) (clpC) [Bacillus bombysepticus str. Wang]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQGAESLIKKKPSVTGSGAE
VGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFTRLHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQHELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=120197 CY96_RS04980 WP_000365398.1 985053..987653(+) (clpC) [Bacillus bombysepticus str. Wang]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAAGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTAAAGCAAGGTGCAGAAAGTTTAATTAAAAAGAAACCTTCTGTAACGGGGAGCGGTGCAGAA
GTTGGAAAATTGTATGTAACGAGCGCTCTGCAACAACTGCTTGTAAGAGCAGGGAAAGAAGCAGAAAAACTGCAGGATGA
TTACATTTCAGTAGAACATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCGATATAAATCAATTATTTACAAGATTGCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCGGAAGTGAGAGCAGGGAAAATCGATCCTGTAATCGGCCGTGA
TAGTGAAATACGACGTGTAATCCGTATTCTTTCACGTAAAACGAAAAACAATCCGGTTTTAATTGGGGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCACAGCGTATTGTGAAAAAGGATGTACCTGAAGGATTGAAAGATAGAACGATT
TTTGCGTTAGATATGAGTGCACTCGTAGCAGGTGCGAAATTCCGTGGTGAGTTCGAAGAACGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGACGCATTTTATTATTCATTGATGAACTTCATACAATAGTTGGAGCTGGTAAAACAGAAG
GAGCCATGGATGCAGGAAATATGTTAAAACCGATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCGACGACGCTCGAT
GAATATCGCAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCAATTTTACGTGGATTAAAAGAACGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGTGCGATTG
TAGCAGCGTCAGTTTTATCAGATCGATATATTTCAGATCGATTCTTACCTGATAAAGCAATTGACCTTGTTGATGAAGCG
TGTGCAACAATTCGTACAGAAATCGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAAACGGATCGTGGTAGCCAAGAACGTCTAAAAACATTGCAACATGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCAAAGTGGGAGAAAGAAAAAGAAGACATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAACGTCTGCGTCGTGAATTAGAAGAAGCAGAAGGCAATTACGATTTAAATAAAGCAGCCGAACTTCGTCACGG
GAAAATTCCAGCAATTGAAAAAGAGTTAAAAGAAGCGGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGCTGGACTGGTATTCCTGTTGCGAAACTCGTGGAAGGT
GAACGCGAGAAATTATTACGCTTAGAGCAAATCTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCTTAGTGTC
AGACGCAGTTCTTCGTGCTCGCGCTGGTATTAAAGATCCGAACCGCCCGATTGGTTCTTTCATCTTCTTAGGACCAACAG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATCGATATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTTGGGTATGAAGAGGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCCGTTATTTTATTAGACGAAATCGAAAAAGCACATCCAGAAGTATTTA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCGCAAGGACGTACAGTGGACTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTATTAGATGGATTAGAAGAAGATGGATCAATTAAAGAAGAATCAAGAGA
ACTTGTGATGGGACAATTAAGAGGACATTTCCGACCGGAGTTTTTAAACCGTGTCGACGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGCATTGTTGATAAAATTGTAAAAGAACTACAAGGTCGTCTAGCTGACCGTCACATTACA
GTAGAATTAACAGATGCAGCAAAAGAATTTGTTGTGGAAGCTGGTTTCGACCCAATGTACGGAGCTCGTCCATTAAAACG
ATACGTACAACGTCAAGTGGAAACGAAATTAGCACGAGAATTAATTGCAGGAACAATTACTGACAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTCGTTCATGTGAAATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• AAA lid domain (AAA_lid_9) (345-447)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.771	100	0.483
clpC	Lactococcus lactis subsp. cremoris KW2	47.199	82.448	0.389