Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   E1470_RS17990 Genome accession   NZ_CP010344
Coordinates   3618927..3619394 (+) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli ECC-1470     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3613927..3624394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1470_RS17940 (E1470_c34500) rplP 3614037..3614447 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  E1470_RS17945 (E1470_c34510) rpsC 3614460..3615161 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  E1470_RS17950 (E1470_c34520) rplV 3615179..3615511 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  E1470_RS17955 (E1470_c34530) rpsS 3615526..3615804 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  E1470_RS17960 (E1470_c34540) rplB 3615821..3616642 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  E1470_RS17965 (E1470_c34550) rplW 3616660..3616962 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  E1470_RS17970 (E1470_c34560) rplD 3616959..3617564 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  E1470_RS17975 (E1470_c34570) rplC 3617575..3618204 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  E1470_RS17980 (E1470_c34580) rpsJ 3618237..3618548 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  E1470_RS17990 (E1470_c34590) pilD 3618927..3619394 (+) 468 WP_000340171.1 A24 family peptidase Machinery gene
  E1470_RS17995 (E1470_c34600) bfr 3619391..3619867 (-) 477 WP_000675515.1 bacterioferritin -
  E1470_RS18000 (E1470_c34610) bfd 3619940..3620134 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  E1470_RS18005 (E1470_c34620) tuf 3620317..3621501 (-) 1185 WP_000031783.1 elongation factor Tu -
  E1470_RS18010 (E1470_c34630) fusA 3621572..3623686 (-) 2115 WP_000124700.1 elongation factor G -
  E1470_RS18015 (E1470_c34640) rpsG 3623783..3624253 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=120177 E1470_RS17990 WP_000340171.1 3618927..3619394(+) (pilD) [Escherichia coli ECC-1470]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=120177 E1470_RS17990 WP_000340171.1 3618927..3619394(+) (pilD) [Escherichia coli ECC-1470]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361

Multiple sequence alignment