Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CL52_RS03440 Genome accession   NZ_CP007511
Coordinates   769344..770936 (-) Length   530 a.a.
NCBI ID   WP_052264512.1    Uniprot ID   -
Organism   Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 764344..775936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CL52_RS03425 (CL52_03495) - 765015..766610 (-) 1596 WP_043218529.1 diguanylate cyclase -
  CL52_RS03430 (CL52_03500) - 766803..767855 (+) 1053 WP_041107889.1 DUF2333 family protein -
  CL52_RS03435 (CL52_03505) pilR 767900..769237 (-) 1338 WP_041107887.1 sigma-54 dependent transcriptional regulator Regulator
  CL52_RS03440 (CL52_03510) pilS 769344..770936 (-) 1593 WP_052264512.1 PAS domain-containing sensor histidine kinase Regulator
  CL52_RS03445 (CL52_03515) - 770926..771159 (-) 234 WP_043218531.1 PP0621 family protein -
  CL52_RS03450 (CL52_03520) - 771240..772232 (-) 993 WP_041107883.1 outer membrane protein assembly factor BamD -
  CL52_RS03455 (CL52_03525) rluD 772380..773354 (+) 975 WP_043218532.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CL52_RS03460 (CL52_03530) pgeF 773351..774082 (+) 732 WP_043218533.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58386.27 Da        Isoelectric Point: 7.0847

>NTDB_id=120166 CL52_RS03440 WP_052264512.1 769344..770936(-) (pilS) [Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)]
MDTDTLAIAAGQSQRILRLYHLYRLAIGLALVLLISSDLHNDLLQMSNPQLFSYGAWLYLIVNIVVAVLLQNPTQTVQVL
ALALVDVMLLAALFYFAGGTPSGIGNLLIIAVAISNILVRGKVGFLIAAVAATGLIYLTFYLSLSHPAANSQFVQAGALG
TLCFAAAFLVQGLTRRLQTSEDLARQRAADVANLEALNTLILQRMRTGILVLDPQQRVLLANQGALQMLEQDSLTGAKLA
EHCPDLIARLGQWQNNPTLRAQGLQISSGGPMLQPSFASLQHGERCNTLVFLEDISQIAQQAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEQLDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRSGLSPR
QCLHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQVHDTAQVWLRLYRDESSDLPMAEVLDDGPGVAPEQLSNIFEP
FYTTESKGTGLGLYISRELCESNQARLDYQPRPEGGSCFRIVFAHPRKLG

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=120166 CL52_RS03440 WP_052264512.1 769344..770936(-) (pilS) [Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)]
GTGGACACTGACACCCTGGCCATCGCCGCTGGCCAGAGCCAGCGCATCCTGCGTCTCTACCACCTCTACCGCCTCGCCAT
CGGACTGGCGCTGGTGCTGCTGATCAGCAGCGACCTGCACAACGACCTGCTGCAGATGAGCAACCCGCAGCTGTTCAGCT
ACGGCGCCTGGCTCTACCTGATCGTCAACATCGTTGTCGCGGTACTGCTGCAGAACCCCACACAGACGGTACAGGTCCTG
GCGCTGGCCCTGGTCGACGTGATGCTGCTGGCCGCCCTGTTCTATTTTGCTGGCGGCACGCCCAGCGGGATCGGCAACCT
GCTGATCATCGCGGTGGCCATCTCGAACATCCTGGTACGCGGCAAGGTCGGCTTTCTGATCGCCGCGGTCGCGGCTACCG
GCCTGATCTACCTGACCTTTTACCTGAGCCTCAGCCACCCGGCCGCCAACAGCCAGTTCGTCCAGGCGGGCGCACTGGGC
ACGCTGTGCTTCGCCGCCGCTTTTCTGGTCCAGGGCCTGACGCGTCGCCTGCAAACCAGTGAAGACCTGGCCCGTCAGCG
CGCGGCGGACGTCGCGAACCTCGAGGCGCTGAACACGCTCATCCTGCAACGCATGCGCACCGGCATTCTCGTGCTCGACC
CGCAGCAGCGCGTACTGCTGGCCAATCAGGGTGCACTGCAGATGCTCGAACAGGACAGCCTCACCGGCGCGAAGCTGGCC
GAGCATTGCCCGGATCTGATCGCGCGCCTGGGCCAATGGCAGAACAACCCGACCTTGCGCGCCCAGGGACTGCAGATTTC
CAGCGGCGGGCCGATGCTGCAGCCAAGCTTTGCCTCGCTGCAGCATGGCGAGCGATGCAATACGCTGGTGTTTCTCGAAG
ACATCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCTTCGCTCGGCCGGCTGACCGCCAGCATCGCCCATGAG
ATCCGCAACCCGCTTGGTGCGATCAGCCATGCCGCCCAACTGCTGCAGGAATCCGAGCAGCTCGACGGCCCGGATCGACG
GCTGGCACAGATCATCCAGGATCATTCGAGACGCATGAACCTGGTGATCGAAAACGTCCTGCAGCTGTCGCGCCGACGGC
AGGCGGAACCGCAGCTGCTGGACCTGAAGTACTGGCTGCATCGCTTCGTCAGCGAGTTCCGCAGCGGCCTTTCGCCGCGC
CAGTGCCTGCATCTGGAAACCATCGGCAGCTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACGCAGGTGCTGACCAA
CCTGGTGCAGAACGGCCTGCGCTATAGCGGGCAGGTGCACGACACAGCCCAGGTATGGCTGCGCCTGTACCGCGACGAGT
CCAGCGACCTGCCGATGGCCGAAGTGCTCGACGATGGTCCCGGCGTGGCACCGGAACAGCTGAGCAACATCTTCGAGCCC
TTCTATACCACCGAGAGCAAGGGCACCGGGCTGGGCTTGTACATTTCGCGGGAGCTGTGCGAGAGCAACCAGGCGCGCCT
GGACTATCAGCCCCGTCCGGAAGGTGGCAGCTGCTTCCGCATTGTCTTCGCCCATCCGCGCAAGCTGGGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.272

99.811

0.642

Multiple sequence alignment