Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E1470_RS10805 Genome accession   NZ_CP010344
Coordinates   2171829..2173256 (+) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli ECC-1470     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2166829..2178256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1470_RS10775 (E1470_c20620) pduU 2167206..2167556 (+) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -
  E1470_RS10780 (E1470_c20630) - 2167561..2168004 (+) 444 WP_001189432.1 EutP/PduV family microcompartment system protein -
  E1470_RS10785 (E1470_c20640) tmaR 2168105..2168434 (-) 330 WP_000450409.1 DUF496 family protein -
  E1470_RS10790 (E1470_c20650) yeeA 2168606..2169664 (-) 1059 WP_001200891.1 FUSC family protein -
  E1470_RS10795 (E1470_c20660) sbmC 2169862..2170335 (-) 474 WP_001105390.1 DNA gyrase inhibitor SbmC -
  E1470_RS10800 (E1470_c20670) dacD 2170454..2171620 (-) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E1470_RS10805 (E1470_c20680) sbcB 2171829..2173256 (+) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  E1470_RS10810 (E1470_c20690) plaP 2173330..2174688 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E1470_RS27065 (E1470_c20700) yoeI 2174678..2174740 (-) 63 WP_010723108.1 membrane protein YoeI -
  E1470_RS10815 (E1470_c20710) yeeY 2174955..2175884 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  E1470_RS10820 (E1470_c20720) yeeZ 2175930..2176754 (-) 825 WP_023567632.1 SDR family oxidoreductase -
  E1470_RS10825 (E1470_c20730) yoeB 2176837..2177091 (-) 255 WP_000767828.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  E1470_RS10830 (E1470_c20740) yefM 2177088..2177339 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  E1470_RS25300 (E1470_c20750) hisL 2177622..2177672 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=120154 E1470_RS10805 WP_000980607.1 2171829..2173256(+) (sbcB) [Escherichia coli ECC-1470]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=120154 E1470_RS10805 WP_000980607.1 2171829..2173256(+) (sbcB) [Escherichia coli ECC-1470]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment