Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   UIB01_RS04275 Genome accession   NZ_CP007509
Coordinates   938320..938871 (-) Length   183 a.a.
NCBI ID   WP_038657184.1    Uniprot ID   -
Organism   Stutzerimonas decontaminans strain 19SMN4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 933320..943871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UIB01_RS04265 (UIB01_04325) - 936873..937478 (-) 606 WP_038657180.1 PilX N-terminal domain-containing pilus assembly protein -
  UIB01_RS04270 (UIB01_04330) - 937475..938323 (-) 849 WP_038657182.1 PilW family protein -
  UIB01_RS04275 (UIB01_04335) pilV 938320..938871 (-) 552 WP_038657184.1 type IV pilus modification protein PilV Machinery gene
  UIB01_RS04280 (UIB01_04340) - 938880..939371 (-) 492 WP_038657186.1 GspH/FimT family pseudopilin -
  UIB01_RS04285 (UIB01_04345) - 939538..940035 (-) 498 WP_038657188.1 GspH/FimT family pseudopilin -
  UIB01_RS04290 (UIB01_04350) thiO 940188..941297 (+) 1110 WP_038657190.1 glycine oxidase ThiO -
  UIB01_RS04295 (UIB01_04355) - 941446..941817 (+) 372 WP_038657192.1 translation initiation factor Sui1 -
  UIB01_RS04300 (UIB01_04360) speA 941940..943853 (+) 1914 WP_038657194.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19852.47 Da        Isoelectric Point: 4.4059

>NTDB_id=120131 UIB01_RS04275 WP_038657184.1 938320..938871(-) (pilV) [Stutzerimonas decontaminans strain 19SMN4]
MKTNNGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAIVLAGDLIEIVRAHPKELFNTSPPQFPMNSGLKG
SSIFYKAAGDDFDDRESCVASPSRIAQTAKELRDCWADKVEALLPGGSELFDSDVYVCRSSNPGDCDGKGSMLEIRLAWQ
VRDGACLDADNSEVCSYTVRVEP

Nucleotide


Download         Length: 552 bp        

>NTDB_id=120131 UIB01_RS04275 WP_038657184.1 938320..938871(-) (pilV) [Stutzerimonas decontaminans strain 19SMN4]
ATGAAAACAAATAACGGCTTCAGCCTGATCGAGGTGCTGGTAGCTCTACTGCTAACCACCATCGGTGTACTCGGCATGGT
GGCCCTGCAGGGGCGCAGCATCCAATACACCCAGGACTCGGTACAGCGCAACACAGCCATCGTCCTGGCCGGCGACCTGA
TCGAAATTGTAAGAGCGCACCCGAAAGAGCTCTTCAACACTTCGCCGCCGCAATTTCCTATGAACAGCGGGTTAAAAGGC
AGCTCCATTTTTTACAAAGCCGCCGGCGATGACTTCGACGATCGCGAGAGCTGCGTGGCGAGCCCGAGCCGAATCGCGCA
AACAGCAAAAGAACTGCGCGACTGCTGGGCAGACAAGGTTGAAGCGTTGCTGCCAGGCGGCAGCGAACTATTCGATAGCG
ACGTGTACGTCTGCCGCAGCTCCAATCCAGGTGATTGCGACGGCAAGGGCTCAATGCTTGAAATCCGCCTGGCCTGGCAA
GTTCGTGACGGCGCATGCCTCGACGCGGACAACTCCGAAGTTTGCAGCTATACAGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

50.811

100

0.514

Multiple sequence alignment