Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GBS85147_RS06440 Genome accession   NZ_CP010319
Coordinates   1279360..1281099 (-) Length   579 a.a.
NCBI ID   WP_000323504.1    Uniprot ID   Q8DYY4
Organism   Streptococcus agalactiae strain GBS85147     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274360..1286099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS85147_RS06420 (GBS85147_1304) - 1275039..1275449 (-) 411 WP_000594937.1 peptide deformylase -
  GBS85147_RS06425 (GBS85147_1305) gdhA 1275519..1276868 (-) 1350 WP_000200443.1 NADP-specific glutamate dehydrogenase -
  GBS85147_RS06430 (GBS85147_1306) - 1277036..1277545 (+) 510 WP_000870953.1 HdeD family acid-resistance protein -
  GBS85147_RS06435 (GBS85147_1307) rcrQ 1277586..1279355 (-) 1770 WP_001227939.1 ABC transporter ATP-binding protein Regulator
  GBS85147_RS06440 (GBS85147_1308) rcrP 1279360..1281099 (-) 1740 WP_000323504.1 ABC transporter ATP-binding protein Regulator
  GBS85147_RS06445 (GBS85147_1309) - 1281166..1281639 (-) 474 WP_000586888.1 GNAT family N-acetyltransferase -
  GBS85147_RS06450 (GBS85147_1310) - 1281636..1283504 (-) 1869 WP_001279330.1 ABC-F family ATP-binding cassette domain-containing protein -
  GBS85147_RS06455 (GBS85147_1311) - 1283515..1284723 (-) 1209 WP_001238954.1 CCA tRNA nucleotidyltransferase -
  GBS85147_RS06460 (GBS85147_1312) - 1284908..1285756 (-) 849 WP_000761620.1 DegV family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64860.30 Da        Isoelectric Point: 6.2591

>NTDB_id=120098 GBS85147_RS06440 WP_000323504.1 1279360..1281099(-) (rcrP) [Streptococcus agalactiae strain GBS85147]
MAYIWSYLKRYPNWLWLDLLGAMLFVTVILGMPTALAGMIDNGVTKGDRTGVYLWTFIMFIFVVLGIIGRITMAYASSRL
TTTMIRDMRNDMYAKLQEYSHHEYEQIGVSSLVTRMTSDTFVLMQFAEMSLRLGLVTPMVMIFSVVMILITSPSLAWLVA
VAMPLLVGVILYVAIKTKPLSERQQTMLDKINQYVRENLTGLRVVRAFARENFQSQKFQVANQRYTDTSTGLFKLTGLTE
PLFVQIIIAMIVAIVWFALDPLQRGAIKIGDLVAFIEYSFHALFSFLLFANLFTMYPRMVVSSHRIREVMDMPISINPNT
EGVTDTKLKGHLEFDNVTFAYPGETESPVLHDISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGKILVDGVDVRD
YNLKSLRQKIGFIPQKALLFTGTIGENLKYGKADATIDDLRQAVDISQAKEFIESHQEAFETHLAEGGSNLSGGQKQRLS
IARAVVKDPDLYIFDDSFSALDYKTDATLRARLKEVTGDSTVLIVAQRVGTIMDADQIIVLDEGEIVGRGTHAQLIENNA
IYREIAESQLKNQNLSEGE

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=120098 GBS85147_RS06440 WP_000323504.1 1279360..1281099(-) (rcrP) [Streptococcus agalactiae strain GBS85147]
ATGGCATATATTTGGTCTTATTTGAAAAGGTACCCAAATTGGTTATGGCTTGATTTACTAGGAGCTATGCTTTTTGTGAC
GGTTATCCTAGGAATGCCCACAGCCTTAGCGGGTATGATTGATAATGGCGTTACAAAAGGTGATCGGACTGGAGTTTATC
TGTGGACGTTCATCATGTTTATATTTGTTGTACTAGGTATTATTGGGCGTATTACGATGGCTTACGCATCTAGTCGCTTA
ACGACAACAATGATTAGAGATATGCGTAATGATATGTATGCTAAGCTTCAAGAATACTCCCATCATGAATATGAACAGAT
AGGTGTATCTTCGCTAGTGACACGTATGACAAGCGATACTTTTGTTTTGATGCAATTTGCTGAAATGTCTTTACGTTTAG
GCCTAGTAACTCCTATGGTAATGATTTTTAGCGTGGTTATGATACTAATTACGAGTCCATCTTTGGCTTGGCTTGTAGCG
GTTGCGATGCCTCTTTTGGTAGGAGTTATTTTATATGTAGCTATAAAAACAAAACCTTTATCTGAAAGACAACAGACTAT
GCTTGATAAAATCAATCAATATGTTCGTGAAAATTTAACAGGGTTACGCGTTGTTAGGGCCTTTGCAAGAGAGAATTTTC
AATCACAAAAATTTCAAGTCGCTAACCAACGTTACACAGATACTTCAACTGGTCTTTTTAAATTAACAGGGCTAACAGAA
CCACTTTTCGTTCAAATTATTATTGCAATGATTGTGGCTATCGTTTGGTTTGCTTTGGATCCTTTACAAAGAGGTGCTAT
TAAAATAGGGGATTTAGTTGCTTTTATCGAATATAGCTTCCATGCTCTCTTTTCATTTTTGCTATTTGCCAATCTTTTTA
CTATGTATCCTCGTATGGTGGTATCTAGCCATCGTATTAGAGAGGTGATGGATATGCCAATCTCTATTAATCCTAATACC
GAAGGTGTTACGGATACGAAACTCAAAGGGCATTTAGAATTTGATAATGTAACATTCGCTTATCCAGGAGAAACAGAGAG
TCCCGTTTTGCATGATATTTCTTTTAAAGCTAAGCCTGGAGAAACAATTGCTTTTATTGGTTCAACAGGTTCAGGAAAAT
CTTCTCTTGTTAATTTGATTCCACGTTTTTATGATGTGACACTTGGAAAAATCTTAGTAGATGGAGTTGATGTAAGAGAT
TATAACCTTAAATCACTTCGCCAAAAGATTGGATTTATCCCCCAAAAAGCTCTTTTATTTACAGGGACAATAGGAGAGAA
TTTAAAATATGGAAAAGCTGATGCTACTATTGATGATCTTAGACAAGCGGTTGATATTTCTCAAGCTAAAGAGTTTATTG
AGAGTCACCAAGAAGCCTTTGAAACGCATTTAGCTGAAGGTGGGAGCAATCTTTCTGGGGGTCAAAAACAACGGTTATCT
ATTGCTAGGGCTGTTGTTAAAGATCCAGATTTATATATTTTTGATGATTCATTTTCTGCTCTCGATTATAAGACAGACGC
TACTTTAAGAGCGCGTCTAAAAGAAGTAACCGGTGATTCTACAGTTTTGATAGTTGCTCAAAGGGTGGGTACGATTATGG
ATGCTGATCAGATTATTGTCCTTGATGAAGGCGAAATTGTCGGTCGTGGTACCCACGCTCAATTAATAGAAAATAATGCT
ATTTATCGTGAAATCGCTGAGTCACAACTGAAGAACCAAAACTTATCAGAAGGAGAGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(30-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DYY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.633

94.128

0.373

Multiple sequence alignment