Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GBS85147_RS06435 Genome accession   NZ_CP010319
Coordinates   1277586..1279355 (-) Length   589 a.a.
NCBI ID   WP_001227939.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS85147     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1272586..1284355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS85147_RS06415 (GBS85147_1303) - 1272930..1275002 (+) 2073 WP_000726925.1 bifunctional metallophosphatase/5'-nucleotidase -
  GBS85147_RS06420 (GBS85147_1304) - 1275039..1275449 (-) 411 WP_000594937.1 peptide deformylase -
  GBS85147_RS06425 (GBS85147_1305) gdhA 1275519..1276868 (-) 1350 WP_000200443.1 NADP-specific glutamate dehydrogenase -
  GBS85147_RS06430 (GBS85147_1306) - 1277036..1277545 (+) 510 WP_000870953.1 HdeD family acid-resistance protein -
  GBS85147_RS06435 (GBS85147_1307) rcrQ 1277586..1279355 (-) 1770 WP_001227939.1 ABC transporter ATP-binding protein Regulator
  GBS85147_RS06440 (GBS85147_1308) rcrP 1279360..1281099 (-) 1740 WP_000323504.1 ABC transporter ATP-binding protein Regulator
  GBS85147_RS06445 (GBS85147_1309) - 1281166..1281639 (-) 474 WP_000586888.1 GNAT family N-acetyltransferase -
  GBS85147_RS06450 (GBS85147_1310) - 1281636..1283504 (-) 1869 WP_001279330.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66214.66 Da        Isoelectric Point: 6.4414

>NTDB_id=120097 GBS85147_RS06435 WP_001227939.1 1277586..1279355(-) (rcrQ) [Streptococcus agalactiae strain GBS85147]
MRKKSVFLRLWSYLTRYKATLFLAIFLKVLSSFMSVLEPFILGLAITELTANLVDMAKGVSGAELNVPYIAGILIIYFFR
GVFYELGSYGSNYFMTTVVQKSIRDIRHDLNRKINKVPVSYFDKHQFGDMLGRFTSDVETVSNALQQSFLQIINAFLSII
LVVVMVLYLNVPLAMIIIACIPVTYFSAQTILKRSQPYFKEQAKILGELNGFVQEKLTGFNIIKLYGREEASSQEFRDIT
DNLRHVGFKASFISGIMMPVLNGISDFIYLIIAFVGGLQVIAGTLTIGNMQAFVQYVWQISQPVQTITQLAGVLQSAKSS
LERIFEVLDEEEEANQVTEKLSHDLTGQVSFHGVDFHYSPDKPLIRDFNLDVEPGQMIAIVGPTGAGKTTLINLLMRFYD
VSEGAITVDGHDIRHLSRQDFRQQFGMVLQDAWLYEGTIKENLRFGNLEASDEDIVAAAKAANVDHFIRTLPGGYNMVMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKKLMEGRTSFVIAHRLSTIQEADNILVLKDGQ
IIEQGNHQKLLADKGFYYELYNSQFSNSK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=120097 GBS85147_RS06435 WP_001227939.1 1277586..1279355(-) (rcrQ) [Streptococcus agalactiae strain GBS85147]
ATGAGAAAAAAATCTGTTTTTTTGAGATTATGGTCTTACCTAACTCGCTACAAAGCTACTCTTTTCTTAGCGATTTTTTT
GAAAGTTTTATCTAGTTTTATGAGTGTTCTGGAGCCTTTTATTTTAGGGTTAGCGATAACAGAGTTGACTGCTAACCTTG
TTGATATGGCTAAGGGAGTTTCTGGAGCAGAATTGAACGTTCCTTATATTGCTGGTATTTTGATTATTTATTTTTTCAGA
GGTGTTTTCTATGAATTAGGTTCTTATGGCTCAAATTATTTTATGACTACTGTCGTTCAAAAAAGTATCCGTGATATCCG
TCATGATTTGAATCGTAAAATCAATAAAGTTCCTGTATCGTATTTTGATAAGCACCAATTTGGAGATATGTTGGGACGTT
TTACAAGTGATGTTGAAACGGTCTCAAATGCTTTACAACAGAGCTTTTTACAGATTATCAATGCTTTTTTAAGTATTATT
CTAGTAGTCGTTATGGTACTTTATCTAAATGTACCATTAGCCATGATTATCATTGCTTGTATTCCTGTAACTTATTTTAG
TGCACAAACGATACTAAAAAGATCCCAACCTTACTTTAAAGAACAGGCAAAGATTCTGGGAGAACTGAATGGTTTTGTAC
AAGAGAAATTAACTGGTTTCAATATCATAAAATTATATGGTAGAGAAGAGGCATCTAGTCAAGAATTTCGTGATATAACG
GATAATCTACGTCATGTAGGTTTCAAAGCTAGCTTCATTTCAGGAATTATGATGCCAGTATTGAATGGTATCTCTGATTT
TATTTACCTTATCATTGCATTTGTTGGCGGTTTACAAGTTATTGCTGGTACCTTAACAATTGGTAACATGCAGGCATTTG
TGCAGTATGTTTGGCAAATTAGTCAACCCGTTCAAACCATTACACAATTAGCAGGTGTTTTGCAAAGTGCAAAATCTTCC
TTAGAACGTATTTTTGAAGTCTTAGATGAAGAAGAGGAAGCCAATCAAGTCACTGAAAAATTGAGCCATGACTTAACCGG
TCAAGTCAGCTTTCATGGTGTCGATTTTCACTATTCTCCGGATAAGCCACTTATCCGCGACTTTAACTTAGATGTAGAAC
CAGGGCAAATGATTGCAATTGTAGGGCCAACAGGTGCAGGTAAGACAACACTTATAAACTTACTCATGAGATTCTACGAT
GTTAGTGAAGGTGCTATCACCGTAGATGGTCACGATATTAGACACCTGTCACGCCAAGATTTCCGCCAACAATTTGGCAT
GGTGTTGCAAGATGCTTGGTTATATGAAGGTACAATAAAAGAAAATCTTAGATTCGGTAATCTTGAAGCCAGTGATGAGG
ATATAGTTGCTGCTGCCAAAGCTGCGAATGTTGACCACTTTATTCGAACGTTACCTGGTGGCTACAATATGGTGATGAAT
CAAGAATCAAGCAATATCTCCTTAGGACAAAAGCAACTGTTGACTATTGCACGTGCTTTATTAGCAGATCCTAAAATTTT
AATTTTAGATGAAGCGACTTCATCTGTTGATACAAGGTTGGAATTGCTTATCCAAAAAGCTATGAAAAAATTGATGGAAG
GAAGAACTAGTTTTGTCATTGCACACCGTCTATCAACGATTCAAGAGGCGGACAACATTTTAGTTCTAAAGGATGGTCAA
ATCATCGAACAAGGTAATCACCAGAAACTCCTAGCAGATAAAGGATTTTATTACGAATTATATAATAGCCAATTTTCAAA
TAGTAAATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

45.331

100

0.453

Multiple sequence alignment