Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DA70_RS10650 Genome accession   NZ_CP007506
Coordinates   2374980..2376353 (+) Length   457 a.a.
NCBI ID   WP_023874151.1    Uniprot ID   A0A378YAD7
Organism   Pandoraea pnomenusa strain RB38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2369980..2381353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA70_RS10630 (DA70_05395) - 2370127..2371401 (+) 1275 WP_025249262.1 DUF1853 family protein -
  DA70_RS10635 (DA70_05390) thiD 2371420..2372253 (-) 834 WP_023596268.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DA70_RS10640 (DA70_05385) lplT 2372255..2373547 (-) 1293 WP_023596267.1 lysophospholipid transporter LplT -
  DA70_RS10645 (DA70_05380) alr 2373886..2374956 (+) 1071 WP_023874150.1 alanine racemase -
  DA70_RS10650 (DA70_05375) radA 2374980..2376353 (+) 1374 WP_023874151.1 DNA repair protein RadA Machinery gene
  DA70_RS10655 (DA70_05370) - 2376494..2378437 (-) 1944 WP_023874152.1 ATP-binding cassette domain-containing protein -
  DA70_RS10660 (DA70_05365) cls 2378586..2380013 (-) 1428 WP_023596263.1 cardiolipin synthase -
  DA70_RS10665 (DA70_05360) prmB 2380142..2381038 (-) 897 WP_023596262.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48164.34 Da        Isoelectric Point: 7.2033

>NTDB_id=120097 DA70_RS10650 WP_023874151.1 2374980..2376353(+) (radA) [Pandoraea pnomenusa strain RB38]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAETSTGHRYQSLAKSTPVRKLAQIEAADVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRSAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKISEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=120097 DA70_RS10650 WP_023874151.1 2374980..2376353(+) (radA) [Pandoraea pnomenusa strain RB38]
ATGGCCAAAGCGAAGACTGTCTATATCTGTACCGAGTGCGGCGGGCAGACGCCCAAGTGGGCGGGGCAATGTCCCAACTG
CAACGGCTGGAATACCCTCGTCGAGTCGGTGGCCGAAACGTCGACCGGCCACCGGTACCAGTCGCTCGCCAAGAGCACGC
CGGTGCGCAAGCTCGCGCAGATCGAAGCGGCCGACGTGCCGCGATTTTCCAGCGGTGTGAGCGAATTCGACCGGGTGCTC
GGCGGCGGGCTCGTCGCCGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGGATCGGCAAGTCGACGCTGCTGCTCCAGTC
CCTGGCGCATCTGGCGCGCGAGCGCCGCGCGCTTTACGTGAGCGGCGAAGAGTCCGGCGCGCAGATCGCGCTGCGCGCGC
AGCGACTGGGCCTCGGTGCGGCGGGCGAGGGCGGCGGTGAGCTCGATCTGCTTGCCGAAATCCAGTTGGAGAAGATTCTC
GGCGCGATCGAATCGGAAAAGCCGGATGTCGTGGTGATCGATTCGATCCAGACCATTTACTCCGAAGCCCTCACCTCGGC
GCCCGGTTCGGTGGCCCAGGTGCGCGAGTGTGCGGCCCAACTCACACGCAGTGCGAAGCAAAGCGGCGTGACCGTCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAGTCTGGCCGGGCCACGCGTGCTTGAACACATCGTCGACACCGTGCTGTATTTC
GAAGGCGACACGCATTCGTCCTATCGCCTCGTTCGCGCGTTCAAGAATCGATTCGGCGCGGTCAACGAACTGGGCGTTTT
CGCCATGACGGAAAAAGGGCTGCGCGGGGTGGCGAATCCGTCGGCCCTGTTCCTCTCGCAGCATGAGCAGAGCGTGCCGG
GCTCCTGCGTGCTGGTGACCCAGGAGGGCACCCGTCCGCTGCTCGTCGAAGTGCAGGCGCTGGTGGATACGGCTCAGGTG
CCGAATCCGCGTCGTCTGGCGGTGGGATTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGTCATGCATCGTCACGCCGG
CATCGCCTGCTTCGATCAGGATGTGTTCCTCAATGCCGTGGGCGGTGTGAAGATTTCGGAGCCGGCGGCCGACCTGGCCG
TGCTGCTGGCGATCCACTCGTCGCTGCGCAACAAGCCCTTGCCGCGCGGCATCGTCGCGTTTGGCGAAGTCGGGCTGGCC
GGGGAAATCCGGCCGAGCCCGCGGGGGCAGGATCGTCTCAAGGAAGCCGCGAAGCTCGGCTTCTCGATTGCCATCATTCC
GAAGGCGAACGCGCCCAAACAACCCATCGACGGTCTTGAAGTGCACGCCGTCGACCGTCTGGAGCAGGCGATTTCGGTCG
TGGCCGGATTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378YAD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.188

100

0.495
  radA Streptococcus pneumoniae Rx1

48.605

94.092

0.457
  radA Streptococcus pneumoniae D39

48.605

94.092

0.457
  radA Streptococcus pneumoniae R6

48.605

94.092

0.457
  radA Streptococcus pneumoniae TIGR4

48.605

94.092

0.457
  radA Streptococcus mitis SK321

48.605

94.092

0.457
  radA Streptococcus mitis NCTC 12261

48.605

94.092

0.457

Multiple sequence alignment