Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   DA70_RS02635 Genome accession   NZ_CP007506
Coordinates   565433..566938 (-) Length   501 a.a.
NCBI ID   WP_369798653.1    Uniprot ID   -
Organism   Pandoraea pnomenusa strain RB38     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 560433..571938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA70_RS02605 (DA70_13615) mutY 560450..561619 (+) 1170 WP_024788677.1 A/G-specific adenine glycosylase -
  DA70_RS02610 (DA70_13610) rapZ 561653..562525 (-) 873 WP_023872989.1 RNase adapter RapZ -
  DA70_RS02615 (DA70_13605) - 562706..563032 (-) 327 WP_023597765.1 PsiF family protein -
  DA70_RS02620 (DA70_13600) hprK 563186..564151 (-) 966 WP_023597764.1 HPr(Ser) kinase/phosphatase -
  DA70_RS02625 (DA70_13595) ptsN 564251..564706 (-) 456 WP_023597763.1 PTS IIA-like nitrogen regulatory protein PtsN -
  DA70_RS02630 (DA70_13590) hpf 564943..565296 (-) 354 WP_023597762.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DA70_RS02635 (DA70_13585) rpoN/rpoN1 565433..566938 (-) 1506 WP_369798653.1 RNA polymerase factor sigma-54 Machinery gene
  DA70_RS02640 (DA70_13580) lptB 567015..567785 (-) 771 WP_028731000.1 LPS export ABC transporter ATP-binding protein -
  DA70_RS02645 (DA70_13575) lptA 567808..568506 (-) 699 WP_025249901.1 lipopolysaccharide transport periplasmic protein LptA -
  DA70_RS02650 (DA70_13570) lptC 568503..569162 (-) 660 WP_023597758.1 LPS export ABC transporter periplasmic protein LptC -
  DA70_RS02655 (DA70_13565) - 569187..569759 (-) 573 WP_025249900.1 HAD hydrolase family protein -
  DA70_RS02660 (DA70_13560) - 569771..570751 (-) 981 WP_023597756.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56062.15 Da        Isoelectric Point: 5.9083

>NTDB_id=120090 DA70_RS02635 WP_369798653.1 565433..566938(-) (rpoN/rpoN1) [Pandoraea pnomenusa strain RB38]
MKARHAMKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERSTSA
SSASEGHESANGHDETRELDGQTRFDDSNQDSGSDWSLNDFARSGSASDDDDNARPQLHVDHPNLREHLLAQLRLTKAGP
RDRALVEFLIESLDEDGYLGTMLDEIQADMPEELALETEEINAALALLQSFDPAGVGARTPSECLRLQLQRLPPSNVRTL
SLRIVSDHLELLAARDYTRLRRLLGVSEDSLRAAHHLIRSLDPFPGAAYGSPQADYVVPDVLVRKQGSNWIAELNPEVMP
RLRINEMYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLG
LHESTISRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVAR
RTVAKYREAMRIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=120090 DA70_RS02635 WP_369798653.1 565433..566938(-) (rpoN/rpoN1) [Pandoraea pnomenusa strain RB38]
ATGAAGGCGAGACACGCTATGAAACCGACTCTTCAACTCCGCACATCGCAGCACCTGACCCTCACGCCGCAGTTGCAGCA
ATCCATCCGGTTGTTGCAACTGTCGACGCTCGAACTTCAGCAGGAAGTCGAGCACGCCCTCACCCAGAACCCGATGCTCG
AGCGCGAGGACGACTGGCTCGCGGGCTCGGTACGTGTCGGCACGGACGGGTCGCTTCGCAACGAGCGCAGCACCTCGGCG
AGCAGCGCCAGCGAGGGCCATGAGTCCGCCAACGGCCATGACGAAACCCGCGAGCTCGACGGCCAGACCCGCTTCGACGA
CAGCAACCAGGACAGCGGCAGCGATTGGAGTCTTAACGATTTCGCCCGTTCGGGCAGCGCCTCGGACGACGACGACAACG
CGCGCCCGCAGTTGCACGTCGATCACCCCAACCTTCGCGAACACCTGCTCGCGCAGCTGCGCCTGACCAAGGCAGGGCCG
CGCGATCGCGCGCTTGTCGAATTCCTGATCGAATCGCTCGACGAAGACGGCTACCTCGGCACCATGCTCGACGAAATCCA
GGCGGATATGCCTGAAGAGCTGGCGCTCGAGACCGAGGAGATCAACGCGGCGCTCGCGCTCCTGCAGAGCTTCGATCCGG
CCGGTGTGGGTGCGCGTACGCCGTCCGAATGCCTGCGCCTTCAGTTGCAGCGCCTGCCGCCGAGCAATGTGCGCACGCTC
TCGCTGCGCATCGTCTCGGATCACCTGGAACTGCTCGCCGCGCGCGATTACACGCGTTTGCGTCGCCTGCTCGGCGTGAG
CGAAGACAGCCTGCGCGCGGCGCATCACCTGATTCGCTCCCTCGACCCTTTCCCCGGCGCGGCCTATGGCTCGCCGCAGG
CCGATTACGTGGTGCCCGACGTGCTGGTGCGCAAGCAGGGCAGCAACTGGATCGCCGAACTCAACCCCGAGGTCATGCCG
CGGCTGCGCATCAACGAGATGTACGCGCGAATTCTGCGAAACAACCGCAACGATCCGGGCACCGGCAATCTGCAGCAACA
GCTCCAGGAAGCCCGCTGGCTGATCAAGAACATCCAGCAACGGTTCGACACGATCCTGCGTGTCGCACAGGCGATCGTCG
AGCGTCAGAAGAACTTCTTCACGCACGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGT
TTACATGAATCCACGATTTCACGGGTGACAACCAGTAAGTACATGCTCACTCCATTCGGGACTTTCGAGCTCAAGTACTT
CTTTGGTTCGCACGTGGCCACGGAGGCGGGCGGCGCAGCGTCATCGACGGCCATCCGCGCACTCATCAAGCAACTCATAG
GAGCAGAAGACCCGCAGAGCCCCCTTTCCGACAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGGTTCGTGGTGGCGCGG
CGCACTGTCGCGAAGTACCGCGAGGCCATGCGAATCCCCGCAGTCAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(11-54)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(139-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.463

100

0.685

Multiple sequence alignment