Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DA70_RS02525 Genome accession   NZ_CP007506
Coordinates   544753..545856 (-) Length   367 a.a.
NCBI ID   WP_081215014.1    Uniprot ID   -
Organism   Pandoraea pnomenusa strain RB38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 539753..550856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA70_RS02500 (DA70_13725) rpoH 540344..541282 (-) 939 WP_023872972.1 RNA polymerase sigma factor RpoH -
  DA70_RS02505 (DA70_13720) - 541505..541888 (+) 384 WP_023597787.1 nuclear transport factor 2 family protein -
  DA70_RS02510 (DA70_13715) ybiB 542160..543137 (-) 978 WP_023597786.1 DNA-binding protein YbiB -
  DA70_RS02515 (DA70_13710) maiA 543333..543980 (+) 648 WP_025249909.1 maleylacetoacetate isomerase -
  DA70_RS02520 (DA70_13705) - 543988..544614 (+) 627 WP_023597784.1 LysE/ArgO family amino acid transporter -
  DA70_RS02525 (DA70_13700) pilA 544753..545856 (-) 1104 WP_081215014.1 signal recognition particle-docking protein FtsY Machinery gene
  DA70_RS02530 (DA70_13695) - 546442..547860 (+) 1419 WP_025249907.1 M16 family metallopeptidase -
  DA70_RS02535 (DA70_13690) - 547873..549315 (+) 1443 WP_025249906.1 M16 family metallopeptidase -
  DA70_RS02540 (DA70_13685) - 549422..550372 (-) 951 WP_023872980.1 ABC transporter permease -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38590.01 Da        Isoelectric Point: 4.8051

>NTDB_id=120089 DA70_RS02525 WP_081215014.1 544753..545856(-) (pilA) [Pandoraea pnomenusa strain RB38]
MANVPTSDASETSEWPESPESPESPESPESPESLASSEASASAAPVVVKDASGEAIGEIVSAPAPAPAAKRSWLTRLKAG
LSKTSAGLTGIFVGVKVDENLFEELESALLMSDAGVEATTFLLDALRKKVKAERLTDGEQVKRALHDLLVELLQPLEQSL
VLGREAPLVVMIAGVNGAGKTTSIGKLAKHFQHYGQSVLLAAGDTFRAAAREQLTIWGERNNVAVVSQESGDPAAVVFDA
VNAARARKIDIVMADTAGRLPTQLHLMEELKKIKRVLGKAADGAPHEVLLVIDANTGQNALAQVKAFDDALQLTGLIVTK
LDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAREFADALLG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=120089 DA70_RS02525 WP_081215014.1 544753..545856(-) (pilA) [Pandoraea pnomenusa strain RB38]
ATGGCGAATGTCCCAACGTCCGACGCCTCCGAGACATCCGAATGGCCCGAATCGCCCGAATCGCCCGAATCGCCCGAATC
GCCCGAATCACCCGAATCGCTCGCATCGTCTGAAGCGTCGGCATCGGCCGCGCCGGTCGTCGTGAAGGATGCCAGCGGCG
AAGCCATCGGCGAGATCGTGTCCGCGCCGGCCCCCGCCCCGGCCGCCAAGCGCTCGTGGCTCACGCGGCTCAAGGCGGGC
CTGTCGAAGACGAGCGCCGGCCTCACGGGCATCTTCGTCGGTGTGAAGGTCGACGAGAACCTGTTCGAGGAACTCGAGAG
CGCACTTCTGATGAGCGACGCCGGCGTGGAAGCCACCACGTTCCTGCTCGATGCCCTGCGCAAAAAGGTCAAGGCCGAAC
GGCTGACCGACGGCGAACAGGTCAAGCGCGCATTGCACGACCTGCTCGTCGAACTGCTGCAACCGCTCGAGCAAAGCCTC
GTGCTGGGCCGCGAAGCGCCGCTGGTCGTGATGATCGCGGGCGTGAACGGCGCGGGCAAGACGACCAGCATCGGCAAGCT
TGCCAAGCACTTCCAGCACTACGGTCAGTCGGTTCTCCTTGCCGCCGGCGACACGTTCCGCGCGGCCGCCCGCGAGCAGC
TCACGATCTGGGGCGAGCGCAACAACGTGGCGGTCGTCTCGCAGGAGAGCGGCGATCCGGCCGCCGTCGTGTTCGACGCG
GTCAACGCCGCCCGCGCCCGCAAGATCGACATCGTGATGGCCGATACGGCCGGTCGCCTGCCCACGCAGCTGCATCTGAT
GGAAGAACTCAAGAAGATCAAGCGCGTGCTGGGCAAGGCTGCCGACGGCGCACCGCACGAAGTGCTGCTCGTGATCGATG
CCAATACCGGTCAAAACGCACTCGCGCAGGTCAAGGCGTTCGACGACGCCCTGCAGCTCACCGGCCTCATCGTGACCAAG
CTCGACGGCACCGCCAAGGGCGGCATCCTCGCCGCGATCGCGCGCCAGCGTCCCGTGCCGGTGTACTTCATCGGCGTGGG
CGAAAAGGTCGAGGACCTGCAACCGTTCTCGGCGCGAGAGTTCGCCGACGCCCTGCTCGGGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(87-147)

SRP54-type protein, GTPase domain (SRP54)

(168-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

59.475

93.46

0.556

Multiple sequence alignment