Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CL55_RS07175 Genome accession   NZ_CP007501
Coordinates   1385633..1386997 (-) Length   454 a.a.
NCBI ID   WP_046330472.1    Uniprot ID   -
Organism   Polynucleobacter duraquae strain MWH-MoK4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380633..1391997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CL55_RS07160 (CL55_00014160) dapD 1382687..1383514 (+) 828 WP_046330469.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  CL55_RS07165 (CL55_00014170) dapE 1383532..1384683 (+) 1152 WP_046330470.1 succinyl-diaminopimelate desuccinylase -
  CL55_RS07170 (CL55_00014180) prmB 1384721..1385617 (+) 897 WP_046330471.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  CL55_RS07175 (CL55_00014190) radA 1385633..1386997 (-) 1365 WP_046330472.1 DNA repair protein RadA Machinery gene
  CL55_RS07180 (CL55_00014200) - 1387002..1387511 (-) 510 WP_046330473.1 hypothetical protein -
  CL55_RS07185 (CL55_00014210) - 1387508..1389352 (-) 1845 WP_046331243.1 potassium transporter Kup -
  CL55_RS07195 (CL55_00014220) - 1389936..1390913 (-) 978 WP_046330474.1 FkbM family methyltransferase -
  CL55_RS07200 (CL55_00014230) - 1391176..1391922 (-) 747 WP_046330475.1 formyltransferase family protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48191.07 Da        Isoelectric Point: 7.3470

>NTDB_id=120036 CL55_RS07175 WP_046330472.1 1385633..1386997(-) (radA) [Polynucleobacter duraquae strain MWH-MoK4]
MAKIKTIYICQSCGGTFAKWQGQCPSCQAWNTLEEGLPEVSSNTRFQGLAQSLPRQKLSAISAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSAAGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLLSIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVANPSAIFLSQHAEMVPGACVLVTQEGSRPLLVEIQALVDTAHIPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNKALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKAKIPGLRVIPVERIDQAISAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=120036 CL55_RS07175 WP_046330472.1 1385633..1386997(-) (radA) [Polynucleobacter duraquae strain MWH-MoK4]
TTGGCTAAAATAAAAACAATCTATATCTGTCAGTCATGCGGCGGGACCTTTGCCAAATGGCAAGGTCAGTGCCCCTCATG
CCAGGCATGGAATACGCTGGAGGAGGGCTTGCCTGAGGTGAGCTCAAACACCCGCTTTCAGGGATTGGCGCAGTCACTTC
CCCGCCAAAAGCTTTCTGCTATTTCGGCCGAAGATCTCCCGCGCTTTAGCACTGGCGTAGAAGAGTTTGATCGCGTACTA
GGTGGTGGATTAGTTCCTGGTGGTGTTGTGCTCTTAGGTGGCGATCCTGGGATTGGTAAATCTACTCTCTTGCTCCAAGC
CCTTGCTGAGATGAGTGCTGCTGGTATGAACGTGCTCTATAGCAGTGGCGAAGAGTCTGCAGCGCAAATTGCATTACGTG
CAAAACGTATTGCACTCGATGCGCCACAATTAGAAGTGCTCGCTGAGATTCAGTTAGAAAAGCTCTTATCCATTATGGAT
ACGGTGAAGCCACAGGTCTTGGTGGTCGATTCCATTCAGACTTTGTATTCGGAGGTGCTCAGCTCAGCTCCAGGTTCGGT
TGCGCAAGTACGAGAGTGTGCAGCACAATTAACCAGGGCCGCTAAATCAAGTGGTATCTGCGTCTTGATGGTGGGCCACG
TTACTAAAGATGGTCATTTAGCGGGCCCTCGTGTACTGGAACATATTGTAGATACCGTCTTGTATTTTGAGGGTGACACG
CATTCCTCATTTAGATTAGTGCGCTCGATTAAAAATCGTTTTGGCGCAGTCAATGAGTTAGGTGTGTTTGCTATGACCGA
AAAAGGTCTGCGTGGCGTTGCAAACCCATCGGCGATTTTTCTTTCGCAGCATGCGGAGATGGTTCCGGGTGCCTGCGTAT
TGGTTACACAAGAGGGCAGTCGCCCACTGTTGGTAGAAATTCAGGCGCTAGTAGACACTGCGCATATTCCTAATCCACGT
CGCTTGGCAGTTGGTTTGGAGCAAGCGCGTTTAGCCATGCTCTTAGCGGTGTTACATCGTCATGCTGGTGTTGCCTGCTT
TGATCAGGATGTCTTCTTAAACGCGGTTGGTGGTGTGAAGATCTCAGAGCCAGCAGCTGACTTAGCAGTGTTGCTAGCAA
TTCAGTCTTCAATTCGCAATAAGGCCCTACCCAAGGAGTTGATTGTATTTGGTGAGGTTGGGTTAGCTGGAGAAATTCGC
CCCTGCCCACGGGGTCAGGAACGCTTGAAAGAGGCCGCTAAACTTGGATTTACTGTAGCAATCATCCCGAAGGCCAACAT
GCCTAAGGCAAAGATTCCGGGATTAAGGGTGATACCAGTAGAACGTATTGATCAAGCGATCTCTGCTGCAGCGGAGCTTA
GTTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.571

100

0.487
  radA Streptococcus pneumoniae Rx1

45.556

99.119

0.452
  radA Streptococcus pneumoniae D39

45.556

99.119

0.452
  radA Streptococcus pneumoniae R6

45.556

99.119

0.452
  radA Streptococcus pneumoniae TIGR4

45.556

99.119

0.452
  radA Streptococcus mitis NCTC 12261

45.556

99.119

0.452
  radA Streptococcus mitis SK321

45.556

99.119

0.452

Multiple sequence alignment