Detailed information NTG0119981

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AC789_RS15465
• Genome accession: NZ_CP010315
• Coordinates: 3136956..3137948 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081524.1
• Uniprot ID: -
• Organism: Escherichia coli strain 789
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3131956..3142948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AC789_RS15445 (AC789_1c30580)	otnK	3132731..3133993 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
AC789_RS15450 (AC789_1c30590)	ygbL	3133990..3134628 (+)	639	WP_001278994.1	aldolase	-
AC789_RS15455 (AC789_1c30600)	ygbM	3134633..3135409 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
AC789_RS15460 (AC789_1c30610)	ygbN	3135498..3136862 (+)	1365	WP_000104456.1	GntP family transporter	-
AC789_RS15465 (AC789_1c30620)	rpoS	3136956..3137948 (-)	993	WP_000081524.1	RNA polymerase sigma factor RpoS	Regulator
AC789_RS15470 (AC789_1c30630)	nlpD	3138011..3139105 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AC789_RS15475 (AC789_1c30640)	pcm	3139290..3139916 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AC789_RS15480 (AC789_1c30650)	surE	3139910..3140671 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AC789_RS15485 (AC789_1c30660)	truD	3140652..3141701 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AC789_RS15490 (AC789_1c30670)	ispF	3141698..3142177 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AC789_RS15495 (AC789_1c30680)	ispD	3142177..3142887 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37988.89 Da
• Isoelectric Point: 4.5597

>NTDB_id=119981 AC789_RS15465 WP_000081524.1 3136956..3137948(-) (rpoS) [Escherichia coli strain 789]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDLERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=119981 AC789_RS15465 WP_000081524.1 3136956..3137948(-) (rpoS) [Escherichia coli strain 789]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCTGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712