Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AC789_RS15175 Genome accession   NZ_CP010315
Coordinates   3083073..3083588 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 789     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3078073..3088588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC789_RS15150 (AC789_1c30000) ygaZ 3078472..3079209 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AC789_RS15155 (AC789_1c30010) ygaH 3079199..3079534 (+) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  AC789_RS15160 (AC789_1c30020) emrR 3079625..3080155 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AC789_RS15165 (AC789_1c30030) emrA 3080282..3081454 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AC789_RS15170 (AC789_1c30040) emrB 3081471..3083009 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AC789_RS15175 (AC789_1c30050) luxS 3083073..3083588 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  AC789_RS15180 (AC789_1c30060) gshA 3083738..3085294 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AC789_RS15185 (AC789_1c30070) yqaA 3085367..3085795 (-) 429 WP_001287457.1 YqaA family protein -
  AC789_RS15190 (AC789_1c30080) yqaB 3085792..3086358 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AC789_RS15215 (AC789_1c30130) csrA 3087541..3087726 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=119978 AC789_RS15175 WP_001130207.1 3083073..3083588(-) (luxS) [Escherichia coli strain 789]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=119978 AC789_RS15175 WP_001130207.1 3083073..3083588(-) (luxS) [Escherichia coli strain 789]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment