Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   ZY05719_RS00800 Genome accession   NZ_CP007497
Coordinates   122267..122560 (+) Length   97 a.a.
NCBI ID   WP_011921722.1    Uniprot ID   -
Organism   Streptococcus suis strain ZY05719 isolate diseased pig     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117267..127560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ZY05719_RS00770 (ZY05719_00760) - 118296..118661 (+) 366 WP_002936568.1 DUF1033 family protein -
  ZY05719_RS00775 (ZY05719_00765) - 118696..119639 (-) 944 Protein_116 S66 peptidase family protein -
  ZY05719_RS00780 (ZY05719_00770) comYA 119725..120675 (+) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  ZY05719_RS00785 (ZY05719_00775) comYB 120587..121624 (+) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  ZY05719_RS00790 (ZY05719_00780) comYC 121626..121907 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  ZY05719_RS00795 (ZY05719_00785) comGD 121888..122295 (+) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  ZY05719_RS00800 (ZY05719_00790) comYE 122267..122560 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  ZY05719_RS00805 (ZY05719_00795) comGF/cglF 122547..122981 (+) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  ZY05719_RS00810 (ZY05719_00800) comGG 122959..123369 (+) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  ZY05719_RS00815 (ZY05719_00805) comYH 123426..124379 (+) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  ZY05719_RS00820 (ZY05719_00810) - 124429..125616 (+) 1188 WP_011921727.1 acetate kinase -
  ZY05719_RS00825 (ZY05719_00815) - 125931..126482 (+) 552 WP_012774908.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10817.70 Da        Isoelectric Point: 9.8348

>NTDB_id=119950 ZY05719_RS00800 WP_011921722.1 122267..122560(+) (comYE) [Streptococcus suis strain ZY05719 isolate diseased pig]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=119950 ZY05719_RS00800 WP_011921722.1 122267..122560(+) (comYE) [Streptococcus suis strain ZY05719 isolate diseased pig]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

51.546

100

0.515
  comYE Streptococcus mutans UA159

51.546

100

0.515
  comGE/cglE Streptococcus pneumoniae Rx1

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae D39

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae R6

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae TIGR4

38.043

94.845

0.361

Multiple sequence alignment