Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACN002_RS05290 Genome accession   NZ_CP007491
Coordinates   1067361..1067990 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ACN002     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062361..1072990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN002_RS05265 (ACN002_1010) ycbZ 1062750..1064510 (-) 1761 WP_000156526.1 Lon protease family protein -
  ACN002_RS05270 (ACN002_1011) matP 1064696..1065148 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACN002_RS05275 (ACN002_1012) ompA 1065224..1066276 (-) 1053 WP_001361736.1 porin OmpA -
  ACN002_RS05285 (ACN002_1014) sulA 1066633..1067142 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACN002_RS05290 sxy/tfoX 1067361..1067990 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACN002_RS05295 (ACN002_1015) yccS 1067953..1070115 (-) 2163 WP_000875023.1 YccS family putative transporter -
  ACN002_RS05300 (ACN002_1016) yccF 1070125..1070571 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACN002_RS05305 (ACN002_1017) helD 1070694..1072748 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=119875 ACN002_RS05290 WP_000839153.1 1067361..1067990(+) (sxy/tfoX) [Escherichia coli strain ACN002]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=119875 ACN002_RS05290 WP_000839153.1 1067361..1067990(+) (sxy/tfoX) [Escherichia coli strain ACN002]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment