Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   RP72_RS05845 Genome accession   NZ_CP010314
Coordinates   1124238..1127630 (+) Length   1130 a.a.
NCBI ID   WP_003245201.1    Uniprot ID   O06714
Organism   Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1119238..1132630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP72_RS05835 (RP72_05835) addA 1119296..1122994 (+) 3699 WP_003233100.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  RP72_RS05840 (RP72_05840) sbcD 1123066..1124241 (+) 1176 WP_003233099.1 exonuclease subunit SbcD -
  RP72_RS05845 (RP72_05845) sbcC 1124238..1127630 (+) 3393 WP_003245201.1 exonuclease subunit SbcC Machinery gene
  RP72_RS05850 (RP72_05850) hlpB 1127644..1127946 (+) 303 WP_003245113.1 HNH nuclease-like protein HlpB -
  RP72_RS05855 (RP72_05855) gerPF 1127983..1128201 (-) 219 WP_003233096.1 spore germination protein -
  RP72_RS05860 (RP72_05860) gerPE 1128233..1128634 (-) 402 WP_010886467.1 spore germination protein GerPE -
  RP72_RS05865 (RP72_05865) gerPD 1128634..1128810 (-) 177 WP_003233093.1 spore germination protein GerPD -
  RP72_RS05870 (RP72_05870) gerPC 1128807..1129424 (-) 618 WP_003245548.1 spore germination protein GerPC -
  RP72_RS05875 (RP72_05875) gerPB 1129447..1129680 (-) 234 WP_003233090.1 spore germination protein GerPB -
  RP72_RS05880 (RP72_05880) gerPA 1129695..1129916 (-) 222 WP_003233088.1 spore germination protein -
  RP72_RS05890 (RP72_05890) yisI 1130339..1130509 (-) 171 WP_003233086.1 aspartyl-phosphate phosphatase YisI -
  RP72_RS05895 (RP72_05895) yisJ 1130655..1131578 (-) 924 WP_003245291.1 CotH kinase family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128920.56 Da        Isoelectric Point: 5.3147

>NTDB_id=119829 RP72_RS05845 WP_003245201.1 1124238..1127630(+) (sbcC) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDTLSVSFTF
ALQTNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKVLEQAEARLEAMRKNRDQAK
ERFTEHQEIWNVQKEKSTYEEEEKRLAEEQPHIDSMQKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADR
TAFFQQKHEEYEAWRQHKSEKEPELLAKQEQLSRLQEIEIKLSEAKQEEERKKADLRQKEEALQSVMNELETVTDRLTRG
QNRQTELKQQLKSLQVTSDERKSCQQAAEMALRIRQTEEQIKKEKKRSEELNLVLQKMNEEKNTLVQKTEAEENNIIQAY
EAVQTVYHLVCETERSLTRMTEEARKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSH
LEEDIKRTDVLLTEAAALSQEILSAKIMLEEQSARFIEQCPFLQTIQAQNLEAAASFEHQPVYEAFETAKFEWKRIKQDI
LSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIISELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDR
AAEECEKRIEKSIAFLAEHEAQKEKLRESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDLKL
LKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGID
QFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQM
HIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLT
SLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSG
RGTRVSLELM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=119829 RP72_RS05845 WP_003245201.1 1124238..1127630(+) (sbcC) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
ATGAAGCCGATCGCCTTAAGCATTAAGGGGCTCCACAGCTTTAGAGAGGAGCAGACGATAGATTTTGAAGGCCTTTCCGG
TGCCGGTGTTTTCGGCATTTTCGGCCCGACAGGAAGCGGTAAATCCTCTATACTCGACGCAATGACGCTTGCTTTATACG
GAAAGGTGGAACGGGCGGCGAATAATACGCACGGAATCTTAAATCACGCCGAAGATACGCTGTCTGTGTCCTTTACCTTT
GCGCTTCAGACGAATCACCAAATCTCATACAAAGTCGAGCGTGTGTTTAAGAGAACGGATGAAATGAAGGTAAAAACGGC
ACTTTGCCGCTTCATCGAAATCAAGGACGAGCATACGGTGCTGGCTGATAAAGCCAGCGAAGTGAATAAAAGAGTGGAGG
AGCTCTTAGGGCTGACGATCGACGATTTTACGAGAGCGGTGGTGCTGCCCCAAGGGAAATTTGCTGAATTTCTGTCTTTA
AAAGGGGCAGAGCGCAGGCATATGCTTCAGCGTTTATTTAATTTGGAGCAATATGGAGACAGGCTTGTGAAAAAGCTGAG
ACGGCAGGCGCAGGAAGCCAATGCGAGAAAAAATGAAATGCTTGCTGAACAGTCCGGTCTCGGTGAGGCGAGCTCAGAGG
CAGTGGAGCAGGCTGAAAAGGTTCTCGAACAAGCTGAAGCCCGGCTGGAAGCGATGAGGAAGAACCGTGATCAGGCGAAG
GAGCGGTTTACAGAGCATCAGGAGATATGGAATGTCCAAAAGGAAAAATCCACTTATGAAGAAGAGGAAAAACGTCTCGC
AGAAGAACAGCCGCATATAGACAGCATGCAAAAACGCCTGCTGGAAGCAGAAACAGCAGCAGCCCTTAAGCCCTATGCGG
ACCGGTACGCAGAAGCGATCCAGCATGAGGAGCAAGCTGAAAAGGAACAAACGCTAGCCCAAAAGGATTTAGCAGACCGG
ACAGCTTTCTTTCAGCAAAAACATGAAGAGTATGAAGCGTGGCGCCAGCATAAAAGCGAGAAAGAGCCTGAGCTTTTAGC
CAAACAGGAACAGCTTTCACGCTTGCAGGAAATCGAAATCAAACTGAGTGAGGCCAAGCAAGAGGAAGAGCGCAAAAAGG
CTGACCTCCGGCAGAAAGAAGAGGCTCTTCAATCTGTCATGAATGAATTAGAGACCGTAACAGACCGCCTGACACGAGGG
CAAAACAGACAGACAGAATTGAAGCAGCAGCTCAAATCCCTGCAGGTGACATCCGATGAGCGAAAAAGCTGCCAGCAGGC
CGCAGAGATGGCATTGCGCATCAGACAAACCGAGGAACAAATCAAAAAAGAGAAAAAACGAAGTGAAGAATTGAACCTCG
TGCTGCAGAAGATGAATGAAGAGAAGAATACACTCGTTCAAAAGACGGAAGCGGAAGAAAACAACATCATTCAGGCATAT
GAGGCAGTTCAAACTGTGTACCATTTGGTGTGCGAAACGGAACGCTCATTAACACGTATGACGGAAGAGGCTAGAAAGAG
TCAACACACGCTTCACTTACAGCGTGAAAAAGCAAGGGTGGCACTGCTGACAAAAGAGTTAGCCCAAAAGCTGACTGCCG
GAAAGCCTTGCCCGGTATGCGGTTCAACCGATCATGATCCATCTGCCTCGGTACATGAAACGTATGAAGCCGACAGCCAT
CTTGAAGAGGACATCAAACGGACAGATGTGTTATTGACGGAAGCTGCAGCTCTCAGCCAGGAGATTCTTTCAGCCAAAAT
TATGCTTGAAGAACAGTCCGCGCGCTTTATTGAACAGTGTCCGTTTTTGCAGACAATTCAAGCACAGAACCTTGAAGCGG
CAGCTTCCTTCGAACATCAGCCGGTGTATGAAGCATTTGAAACTGCCAAATTTGAATGGAAACGAATCAAGCAGGACATT
CTTTCTGTTAAGACACGAATGGCACAAATGATTGGCGCCTATCAGGAGTCTTTAAAAAAGGCCGAGCAGCTTAATGAAAA
AATCGGTTTTGAAAAAAGAGAAGCCGACCGTATTGAAAGCATCATCAGTGAGCTTCAATCCTCAATGGACAGCAGTCTGA
ACATGTTTAAAGAAGCATTTCAGAATCAATCTGTGGACGAAGCAGAAAAATGGCAGCAAGCCATTGAAGAAAAGGACCGG
GCTGCAGAAGAATGTGAAAAACGAATTGAGAAGAGTATCGCGTTTCTTGCTGAGCATGAAGCACAAAAGGAAAAACTGCG
GGAATCGGGACACCGGCTTGAGCGGGAAAAGCTGGAGCTTCATTATGCGGCTGAACGCATCAAGAGCGTGATAGCTGATT
ATGAGCACGAACTCGGAGATTATGCAAAAGGAGATTCGATTCAAATCAAACTCCGCTCTGTCCAGCAGGATCTAAAGCTG
TTAAAGGAAAAAGAACAATCTTTATATGAAGAACTGCAAAGCGCCCAAATGAAGCTCAACCAAGCGAAAAGCCGCGCTTC
TGCAAGCGAGCTCACTCTTCAAGAGGCGAAGGGCAGATTGGAAAAAGCAAAAGCTGCTTGGCTTGAGCATACAAAAAACA
CCTCCATTACCCGGACTGAGGAGGTTGAACAAAGTCTCATCCCAGCTGATGAACTTGAAAAGATGAAAACCGGCATAGAC
CAGTTTATGGATAAACTGAAGCAAAATGCTGCAAACTTAAAACGAGTAGCAGAGATACTTGCCGGCAGAGCATTATCAGA
GAGCGAATGGAACGAAACCGTTGCAGCATTACAAGAAGCTGAGGACGCATTTGGCGCTGCTATAGAGGAAAAAGGCGCGG
CCGCAAAAGCACTGGCTGTCATTCGCGACCATCATAAACGGTTTAATGAAATTGAAGCTGAACTGAAAAAATGGCAGATG
CATATCGACAGGCTGGACAAGCTGCAAGCTGTGTTTAAAGGCAATACCTTCGTCGAATTTTTAGCTGAGGAGCAGCTTGA
AAGCGTTGCGAGGGACGCCTCAGCAAGACTCAGTATGCTGACAAGACAGCGCTATGCCATCGAAGTAGATTCTGAGGGCG
GCTTCGTGATGCGGGATGACGCGAATGGAGGCGTACGACGCCCGGTTTCCAGTTTGTCTGGAGGAGAGACCTTCCTCACC
TCGCTTTCACTTGCTCTTGCGCTGTCTGCGCAGATTCAGCTTCGGGGGGAATACCCGCTGCAGTTCTTTTTCTTAGATGA
AGGCTTCGGCACACTGGATCAAGATCTGCTTGATACGGTTGTAACGGCCTTGGAAAAACTTCAGTCAGACAACCTGGCTG
TCGGTGTCATCAGCCATGTGCAGGAACTGCGTGCACGGCTTCCGAAAAAGCTGATCGTCCATCCGGCTGAACCGAGCGGC
CGCGGTACGCGGGTATCACTTGAGTTGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-235)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O06714

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment