Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   NTHIC486_RS01675 Genome accession   NZ_CP007471
Coordinates   337706..338002 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain C486     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 332706..343002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHIC486_RS01665 (NTHIC486_00334) - 334341..337385 (+) 3045 WP_154231905.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  NTHIC486_RS01670 - 337525..337713 (+) 189 Protein_331 type II toxin-antitoxin system RelE/ParE family toxin -
  NTHIC486_RS01675 (NTHIC486_00335) HI0659 337706..338002 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  NTHIC486_RS01680 (NTHIC486_00336) - 338186..340098 (+) 1913 Protein_333 ABC transporter ATP-binding protein -
  NTHIC486_RS01685 (NTHIC486_00338) - 340108..340644 (+) 537 WP_005688146.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  NTHIC486_RS01690 (NTHIC486_00339) - 340660..341211 (+) 552 WP_005688145.1 Sua5/YciO/YrdC/YwlC family protein -
  NTHIC486_RS01695 (NTHIC486_00340) aroE 341215..342021 (+) 807 WP_044345226.1 shikimate dehydrogenase -
  NTHIC486_RS01700 (NTHIC486_00341) - 342033..342785 (+) 753 WP_011272149.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=119729 NTHIC486_RS01675 WP_005650837.1 337706..338002(+) (HI0659) [Haemophilus influenzae strain C486]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=119729 NTHIC486_RS01675 WP_005650837.1 337706..338002(+) (HI0659) [Haemophilus influenzae strain C486]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCCTTGGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment