Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   NTHIC486_RS00185 Genome accession   NZ_CP007471
Coordinates   33087..33599 (-) Length   170 a.a.
NCBI ID   WP_044345128.1    Uniprot ID   -
Organism   Haemophilus influenzae strain C486     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 28087..38599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHIC486_RS00170 (NTHIC486_00033) comQ 31408..31695 (-) 288 WP_044345123.1 DUF5374 domain-containing protein Machinery gene
  NTHIC486_RS00175 (NTHIC486_00034) comP 31688..32371 (-) 684 WP_044345124.1 DUF2572 family protein Machinery gene
  NTHIC486_RS00180 (NTHIC486_00035) comO 32368..33087 (-) 720 WP_044345126.1 type II secretion system protein J Machinery gene
  NTHIC486_RS00185 (NTHIC486_00036) comN 33087..33599 (-) 513 WP_044345128.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NTHIC486_RS00190 (NTHIC486_00037) suhB 33799..34602 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  NTHIC486_RS00195 (NTHIC486_00038) nrfE 34711..36618 (+) 1908 WP_044345130.1 heme lyase NrfEFG subunit NrfE -
  NTHIC486_RS00200 (NTHIC486_00039) - 36618..37148 (+) 531 WP_044345131.1 DsbE family thiol:disulfide interchange protein -
  NTHIC486_RS00205 (NTHIC486_00040) nrfF 37145..38287 (+) 1143 WP_044345132.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19817.00 Da        Isoelectric Point: 8.7271

>NTDB_id=119724 NTHIC486_RS00185 WP_044345128.1 33087..33599(-) (comN) [Haemophilus influenzae strain C486]
MQKGVTLVELLIGLAIISIALNFAVPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=119724 NTHIC486_RS00185 WP_044345128.1 33087..33599(-) (comN) [Haemophilus influenzae strain C486]
ATGCAGAAAGGTGTGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGCGCTGAATTTTGCCGTGCCATT
ATGGCAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGTCAAATTCAGGCTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.235

100

0.982

Multiple sequence alignment