Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   NTHIC486_RS00175 Genome accession   NZ_CP007471
Coordinates   31688..32371 (-) Length   227 a.a.
NCBI ID   WP_044345124.1    Uniprot ID   -
Organism   Haemophilus influenzae strain C486     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 26688..37371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHIC486_RS00160 (NTHIC486_00031) nrdR 27493..27942 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  NTHIC486_RS00165 (NTHIC486_00032) recC 27997..31362 (-) 3366 WP_005686198.1 exodeoxyribonuclease V subunit gamma -
  NTHIC486_RS00170 (NTHIC486_00033) comQ 31408..31695 (-) 288 WP_044345123.1 DUF5374 domain-containing protein Machinery gene
  NTHIC486_RS00175 (NTHIC486_00034) comP 31688..32371 (-) 684 WP_044345124.1 DUF2572 family protein Machinery gene
  NTHIC486_RS00180 (NTHIC486_00035) comO 32368..33087 (-) 720 WP_044345126.1 type II secretion system protein J Machinery gene
  NTHIC486_RS00185 (NTHIC486_00036) comN 33087..33599 (-) 513 WP_044345128.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NTHIC486_RS00190 (NTHIC486_00037) suhB 33799..34602 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  NTHIC486_RS00195 (NTHIC486_00038) nrfE 34711..36618 (+) 1908 WP_044345130.1 heme lyase NrfEFG subunit NrfE -
  NTHIC486_RS00200 (NTHIC486_00039) - 36618..37148 (+) 531 WP_044345131.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25482.31 Da        Isoelectric Point: 9.3068

>NTDB_id=119722 NTHIC486_RS00175 WP_044345124.1 31688..32371(-) (comP) [Haemophilus influenzae strain C486]
MTIQKGIITLTILIFISGLLTAILLLDDTHLSFFRAQQNQRKLYVERTLQLQKMTAAKKQTACLDLPLNNDESVKQISIT
LDGATDSIQYFLWCERISLFKKSPKKGDNQGALKDFIHTEKLTDFRPHFSSPPRILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITNGNLTLDGVTLAYGKKTVVTLVRQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=119722 NTHIC486_RS00175 WP_044345124.1 31688..32371(-) (comP) [Haemophilus influenzae strain C486]
ATGACAATACAAAAAGGCATTATTACGCTGACTATTCTGATTTTTATTTCGGGTTTATTAACCGCAATCTTGTTGTTAGA
TGATACCCATTTAAGTTTTTTTCGGGCGCAACAAAATCAACGAAAACTGTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACAGCGGCGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATGATGAAAGTGTAAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATAAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTCATTCACACAGAAAAACTTACAGATTTTCGACCGCACTTTTCTTCCCCACCCA
GAATTTTAAACGCGAATAAAACACCTAAACTTTATTGGTTTTCAGATTCACAAGCGGAAGTTGAAATTAATGGCACTGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCGCAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTAGTAACCTTAGTTCGACAATATAGCCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

91.63

100

0.916

Multiple sequence alignment