Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NTHI477_RS08735 Genome accession   NZ_CP007470
Coordinates   1777302..1777598 (-) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain 477     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1772302..1782598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI477_RS08710 (NTHI477_01755) - 1772515..1773267 (-) 753 WP_044333025.1 DUF3800 domain-containing protein -
  NTHI477_RS08715 (NTHI477_01756) aroE 1773279..1774085 (-) 807 WP_044333027.1 shikimate dehydrogenase -
  NTHI477_RS08720 (NTHI477_01757) - 1774089..1774640 (-) 552 WP_044333031.1 Sua5/YciO/YrdC/YwlC family protein -
  NTHI477_RS08725 (NTHI477_01758) - 1774656..1775192 (-) 537 WP_044333034.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  NTHI477_RS08730 (NTHI477_01759) - 1775202..1777118 (-) 1917 WP_044333037.1 ABC transporter ATP-binding protein -
  NTHI477_RS08735 (NTHI477_01760) HI0659 1777302..1777598 (-) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  NTHI477_RS08740 (NTHI477_01761) - 1777591..1777773 (-) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  NTHI477_RS08745 (NTHI477_01762) - 1778043..1781039 (-) 2997 WP_044333040.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=119716 NTHI477_RS08735 WP_005650837.1 1777302..1777598(-) (HI0659) [Haemophilus influenzae strain 477]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=119716 NTHI477_RS08735 WP_005650837.1 1777302..1777598(-) (HI0659) [Haemophilus influenzae strain 477]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment