Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | NTHI477_RS07670 | Genome accession | NZ_CP007470 |
| Coordinates | 1568100..1568513 (-) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain 477 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1563100..1573513
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NTHI477_RS07640 (NTHI477_01542) | - | 1563483..1563755 (-) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
| NTHI477_RS07645 (NTHI477_01543) | - | 1563895..1564485 (-) | 591 | WP_005686892.1 | YjaG family protein | - |
| NTHI477_RS07650 (NTHI477_01544) | nudC | 1564521..1565315 (-) | 795 | WP_044332751.1 | NAD(+) diphosphatase | - |
| NTHI477_RS07655 (NTHI477_01545) | nfuA | 1565382..1565978 (-) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| NTHI477_RS07660 (NTHI477_01546) | - | 1566054..1566740 (-) | 687 | WP_011272045.1 | ComF family protein | - |
| NTHI477_RS07665 (NTHI477_01547) | pilQ | 1566753..1568090 (-) | 1338 | Protein_1488 | type IV pilus secretin PilQ | - |
| NTHI477_RS07670 (NTHI477_01549) | comD | 1568100..1568513 (-) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| NTHI477_RS07675 (NTHI477_01550) | comC | 1568510..1569031 (-) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| NTHI477_RS07680 (NTHI477_01551) | comB | 1569028..1569534 (-) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| NTHI477_RS07685 (NTHI477_01552) | comA | 1569535..1570332 (-) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| NTHI477_RS07690 (NTHI477_01553) | - | 1570431..1573025 (+) | 2595 | WP_042593320.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=119707 NTHI477_RS07670 WP_011272047.1 1568100..1568513(-) (comD) [Haemophilus influenzae strain 477]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=119707 NTHI477_RS07670 WP_011272047.1 1568100..1568513(-) (comD) [Haemophilus influenzae strain 477]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |