Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   NTHI477_RS05385 Genome accession   NZ_CP007470
Coordinates   1122912..1125278 (-) Length   788 a.a.
NCBI ID   WP_044331549.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 477     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1117912..1130278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI477_RS05370 (NTHI477_01087) kdsB 1119202..1119966 (-) 765 WP_044331544.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NTHI477_RS05375 (NTHI477_01088) lpxK 1120037..1121035 (-) 999 WP_005657751.1 tetraacyldisaccharide 4'-kinase -
  NTHI477_RS05380 (NTHI477_01089) msbA 1121108..1122871 (-) 1764 WP_044331547.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  NTHI477_RS05385 (NTHI477_01090) rec2 1122912..1125278 (-) 2367 WP_044331549.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NTHI477_RS05390 (NTHI477_01091) dksA 1125538..1125975 (+) 438 WP_005657744.1 RNA polymerase-binding protein DksA -
  NTHI477_RS05395 (NTHI477_01092) pcnB 1126223..1127581 (+) 1359 WP_044333184.1 polynucleotide adenylyltransferase PcnB -
  NTHI477_RS05400 (NTHI477_01093) folK 1127590..1128072 (+) 483 WP_011271807.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NTHI477_RS05405 (NTHI477_01094) tsaE 1128148..1128624 (+) 477 WP_005693857.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NTHI477_RS05410 (NTHI477_01095) - 1128632..1129930 (+) 1299 WP_038440953.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89560.45 Da        Isoelectric Point: 9.9767

>NTDB_id=119696 NTHI477_RS05385 WP_044331549.1 1122912..1125278(-) (rec2) [Haemophilus influenzae strain 477]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLLQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLANNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITVVGTVKSAVKIADVSSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQTNTAHLIAISGLHIGLAM
GIGFCLVRVMQVFLPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQLGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPLYSFLLVPLILFAVFTNGAIFSWQLANKLAEVITGLISVFQGNWLTVSFNLALFLTALCGGIFMLIIWRIYREPE
ASPSTWKIKRPRFFTLNLSKPLLKNERINVLLCSFGIILMCFMILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHRVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDLA
IISSGRWNPWKFPHYLVMERLQRYKSAVENTAISGQVRVNFFQDRLEIQQARTEFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=119696 NTHI477_RS05385 WP_044331549.1 1122912..1125278(-) (rec2) [Haemophilus influenzae strain 477]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTCGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGCGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACTGTTGTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTAAAGAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATTGCCTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAACCACTTGGTCAATTTACCAACAAACCAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTGCTTGGTGCGTGTTATGCAAGTATTTTTACCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCCTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTCGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCACTAATGCCCCTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCCGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCTCTTTTTCAATGGAAAAATCGCCCCTTTTCACCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTGGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTGAGTGGATTTTTAGCCAAT
CTTATTGCTGTACCACTTTATAGCTTTTTGCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAACGGTGCAATATTTTC
TTGGCAACTTGCAAACAAGCTGGCTGAAGTGATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGGCGGAATATTTATGTTAATTATTTGGCGTATTTATCGAGAACCAGAG
GCTTCACCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCTATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTGCAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCATGACGATAACGATCACGCAGGCGGTGCTTCGACAATTTTAAAGGCATATCCCAATGTGGAAT
TGATTACCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTTGATGA
TGGAAAGCATCGAGTTTTGCTAACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTGGGGCATCACGGAAGTAAAACATCGACAAGTGAATATTTACTTTCCCAGGTTAGACCAGATTTGGCG
ATTATTTCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTTGGTTATGGAAAGGCTTCAACGCTATAAAAGTGC
GGTAGAAAATACCGCTATTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACAGATTAGAAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-724)

Domain of unknown function (DUF4131) (DUF4131)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

94.67

100

0.947

Multiple sequence alignment