Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   NTHI477_RS03790 Genome accession   NZ_CP007470
Coordinates   798383..799099 (-) Length   238 a.a.
NCBI ID   WP_044330932.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 477     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 793383..804099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI477_RS03770 (NTHI477_00765) nrdR 793474..793923 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  NTHI477_RS03775 (NTHI477_00766) recC 793985..797359 (-) 3375 WP_044330924.1 exodeoxyribonuclease V subunit gamma -
  NTHI477_RS03780 (NTHI477_00767) comQ 797405..797692 (-) 288 WP_044330926.1 DUF5374 domain-containing protein Machinery gene
  NTHI477_RS03785 (NTHI477_00768) comP 797685..798368 (-) 684 WP_044330929.1 DUF2572 family protein Machinery gene
  NTHI477_RS03790 (NTHI477_00769) comO 798383..799099 (-) 717 WP_044330932.1 PulJ/GspJ family protein Machinery gene
  NTHI477_RS03795 (NTHI477_00770) comN 799099..799611 (-) 513 WP_044330935.1 pilus assembly FimT family protein Machinery gene
  NTHI477_RS03800 (NTHI477_00771) suhB 799811..800614 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  NTHI477_RS03805 (NTHI477_00772) nrfE 800723..802630 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  NTHI477_RS03810 (NTHI477_00773) - 802630..803160 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26689.06 Da        Isoelectric Point: 9.6938

>NTDB_id=119693 NTHI477_RS03790 WP_044330932.1 798383..799099(-) (comO) [Haemophilus influenzae strain 477]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGTNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIKGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=119693 NTHI477_RS03790 WP_044330932.1 798383..799099(-) (comO) [Haemophilus influenzae strain 477]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCTCTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACACATGTTATTGCATTTAAAACTACAAGCAGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAGCTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGTTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGCTGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTACAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGTTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACGTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAAGCTACAATTTAATTGGTTAATTAAAGGAAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.479

100

0.975

Multiple sequence alignment