Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   NTHI477_RS03780 Genome accession   NZ_CP007470
Coordinates   797405..797692 (-) Length   95 a.a.
NCBI ID   WP_044330926.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 477     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 792405..802692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI477_RS03770 (NTHI477_00765) nrdR 793474..793923 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  NTHI477_RS03775 (NTHI477_00766) recC 793985..797359 (-) 3375 WP_044330924.1 exodeoxyribonuclease V subunit gamma -
  NTHI477_RS03780 (NTHI477_00767) comQ 797405..797692 (-) 288 WP_044330926.1 DUF5374 domain-containing protein Machinery gene
  NTHI477_RS03785 (NTHI477_00768) comP 797685..798368 (-) 684 WP_044330929.1 DUF2572 family protein Machinery gene
  NTHI477_RS03790 (NTHI477_00769) comO 798383..799099 (-) 717 WP_044330932.1 PulJ/GspJ family protein Machinery gene
  NTHI477_RS03795 (NTHI477_00770) comN 799099..799611 (-) 513 WP_044330935.1 pilus assembly FimT family protein Machinery gene
  NTHI477_RS03800 (NTHI477_00771) suhB 799811..800614 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  NTHI477_RS03805 (NTHI477_00772) nrfE 800723..802630 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11012.77 Da        Isoelectric Point: 8.5208

>NTDB_id=119691 NTHI477_RS03780 WP_044330926.1 797405..797692(-) (comQ) [Haemophilus influenzae strain 477]
MNKGMSLITLLFSLALFSVLFLVFNQWTADQRKSAVKTYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENEH
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=119691 NTHI477_RS03780 WP_044330926.1 797405..797692(-) (comQ) [Haemophilus influenzae strain 477]
ATGAATAAAGGAATGTCGCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGATCAGCGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACAC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

92.632

100

0.926

Multiple sequence alignment