Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   PJ18_RS03165 Genome accession   NZ_CP010307
Coordinates   596691..597074 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 00-6200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591691..602074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ18_RS03145 (PJ18_03145) - 591770..593704 (-) 1935 WP_002926153.1 ribonuclease R family protein -
  PJ18_RS03150 (PJ18_03150) ilvC 593823..594845 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  PJ18_RS03155 (PJ18_03155) - 594849..595931 (+) 1083 WP_002931136.1 divergent polysaccharide deacetylase family protein -
  PJ18_RS03160 (PJ18_03160) dprA 595921..596694 (+) 774 WP_002926145.1 DNA-processing protein DprA Machinery gene
  PJ18_RS03165 (PJ18_03165) dprB 596691..597074 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  PJ18_RS03170 (PJ18_03170) - 597103..597942 (+) 840 WP_079263941.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  PJ18_RS03175 (PJ18_03175) msrA 598118..598615 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  PJ18_RS03180 (PJ18_03180) ppa 598656..599174 (-) 519 WP_002855031.1 inorganic diphosphatase -
  PJ18_RS03185 (PJ18_03185) adk 599184..599762 (-) 579 WP_002855137.1 adenylate kinase -
  PJ18_RS03190 (PJ18_03190) aspS 599759..601510 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=119684 PJ18_RS03165 WP_002856861.1 596691..597074(+) (dprB) [Campylobacter jejuni subsp. jejuni strain 00-6200]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=119684 PJ18_RS03165 WP_002856861.1 596691..597074(+) (dprB) [Campylobacter jejuni subsp. jejuni strain 00-6200]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449