Detailed information NTG0119588

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SS52_RS18905
• Genome accession: NZ_CP010304
• Coordinates: 3606760..3607752 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O157:H7 str. SS52
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3601760..3612752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SS52_RS18880 (SS52_3869)	pphB	3603122..3603778 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
SS52_RS18885 (SS52_3870)	-	3603819..3604055 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
SS52_RS18890 (SS52_3871)	-	3604066..3605493 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
SS52_RS18895 (SS52_3872)	-	3605493..3606086 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
SS52_RS18900 (SS52_3873)	-	3606233..3606640 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
SS52_RS18905 (SS52_3874)	rpoS	3606760..3607752 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
SS52_RS18910 (SS52_3875)	nlpD	3607815..3608861 (-)	1047	WP_306344721.1	murein hydrolase activator NlpD	-
SS52_RS18915 (SS52_3876)	pcm	3609046..3609672 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
SS52_RS18920 (SS52_3877)	surE	3609666..3610427 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
SS52_RS18925 (SS52_3878)	truD	3610408..3611457 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
SS52_RS18930 (SS52_3879)	ispF	3611454..3611933 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
SS52_RS18935 (SS52_3880)	ispD	3611933..3612643 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=119588 SS52_RS18905 WP_000081550.1 3606760..3607752(-) (rpoS) [Escherichia coli O157:H7 str. SS52]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=119588 SS52_RS18905 WP_000081550.1 3606760..3607752(-) (rpoS) [Escherichia coli O157:H7 str. SS52]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715